We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGATA3
(GeneCards)
ModelGATA3_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusdvAGATAAvvd
Best auROC (human)0.901
Best auROC (mouse)0.893
Peak sets in benchmark (human)98
Peak sets in benchmark (mouse)60
Aligned words500
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
HGNCHGNC:4172
EntrezGeneGeneID:2625
(SSTAR profile)
UniProt IDGATA3_HUMAN
UniProt ACP23771
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.8339099999999995
0.0005 6.650055
0.0001 8.183
GTEx tissue expression atlas GATA3 expression
ReMap ChIP-seq dataset list GATA3 datasets
Motifs in JASPAR
MA0037.1 (GATA3; Homo sapiens)
MA0037.2 (GATA3; Homo sapiens)
MA0037.3 (GATA3; Homo sapiens)
PCM
ACGT
01224.046.0127.0103.0
02174.0152.0131.043.0
03389.03.04.0104.0
045.02.0493.00.0
05494.02.03.01.0
0673.05.020.0402.0
07461.08.021.010.0
08434.01.047.018.0
09165.0112.0202.021.0
10279.060.0128.033.0
11222.040.0112.0126.0
PWM
ACGT
010.578-0.9790.016-0.191
020.3270.1930.046-1.044
031.127-3.325-3.126-0.181
04-2.961-3.5731.363-4.4
051.365-3.573-3.325-3.903
06-0.529-2.961-1.771.16
071.296-2.584-1.725-2.394
081.236-3.903-0.958-1.868
090.275-0.1080.475-1.725
100.796-0.7210.023-1.298
110.569-1.114-0.1080.008