Model info
| Transcription factor | GATA3 (GeneCards) | ||||||||
| Model | GATA3_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvAGATAAvvd | ||||||||
| Best auROC (human) | 0.901 | ||||||||
| Best auROC (mouse) | 0.893 | ||||||||
| Peak sets in benchmark (human) | 98 | ||||||||
| Peak sets in benchmark (mouse) | 60 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers {2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
| HGNC | HGNC:4172 | ||||||||
| EntrezGene | GeneID:2625 (SSTAR profile) | ||||||||
| UniProt ID | GATA3_HUMAN | ||||||||
| UniProt AC | P23771 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GATA3 expression | ||||||||
| ReMap ChIP-seq dataset list | GATA3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 224.0 | 46.0 | 127.0 | 103.0 |
| 02 | 174.0 | 152.0 | 131.0 | 43.0 |
| 03 | 389.0 | 3.0 | 4.0 | 104.0 |
| 04 | 5.0 | 2.0 | 493.0 | 0.0 |
| 05 | 494.0 | 2.0 | 3.0 | 1.0 |
| 06 | 73.0 | 5.0 | 20.0 | 402.0 |
| 07 | 461.0 | 8.0 | 21.0 | 10.0 |
| 08 | 434.0 | 1.0 | 47.0 | 18.0 |
| 09 | 165.0 | 112.0 | 202.0 | 21.0 |
| 10 | 279.0 | 60.0 | 128.0 | 33.0 |
| 11 | 222.0 | 40.0 | 112.0 | 126.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.578 | -0.979 | 0.016 | -0.191 |
| 02 | 0.327 | 0.193 | 0.046 | -1.044 |
| 03 | 1.127 | -3.325 | -3.126 | -0.181 |
| 04 | -2.961 | -3.573 | 1.363 | -4.4 |
| 05 | 1.365 | -3.573 | -3.325 | -3.903 |
| 06 | -0.529 | -2.961 | -1.77 | 1.16 |
| 07 | 1.296 | -2.584 | -1.725 | -2.394 |
| 08 | 1.236 | -3.903 | -0.958 | -1.868 |
| 09 | 0.275 | -0.108 | 0.475 | -1.725 |
| 10 | 0.796 | -0.721 | 0.023 | -1.298 |
| 11 | 0.569 | -1.114 | -0.108 | 0.008 |