Check the newest release v13
Model info
Transcription factorGATA4
(GeneCards)
ModelGATA4_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusnvWGATAASvn
Best auROC (human)0.96
Best auROC (mouse)0.945
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)17
Aligned words463
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
HGNCHGNC:4173
EntrezGeneGeneID:2626
(SSTAR profile)
UniProt IDGATA4_HUMAN
UniProt ACP43694
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.302205
0.0005 11.855055
0.0001 16.19273
GTEx tissue expression atlas GATA4 expression
ReMap ChIP-seq dataset list GATA4 datasets
Motifs in JASPAR
MA0482.1 (Gata4; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0131.061.045.015.024.030.04.018.019.040.023.016.034.048.023.014.0
0279.05.02.022.085.04.01.089.068.05.00.022.042.02.01.018.0
033.00.0268.03.04.00.012.00.00.01.03.00.02.00.0148.01.0
048.00.00.01.01.00.00.00.0417.04.05.05.04.00.00.00.0
0510.06.08.0406.01.01.00.02.00.00.02.03.01.00.00.05.0
069.01.00.02.05.00.00.02.010.00.00.00.0386.05.02.023.0
07367.07.022.014.03.00.01.02.01.00.01.00.020.00.07.00.0
0834.059.0293.05.00.02.04.01.00.014.015.02.01.04.010.01.0
099.03.020.03.056.08.05.010.0164.053.083.022.02.01.05.01.0
1066.028.058.079.027.018.01.019.042.018.028.025.011.06.07.012.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.1070.7780.476-0.606-0.1450.075-1.862-0.428-0.3750.359-0.187-0.5430.1980.54-0.187-0.673
021.035-1.656-2.472-0.2311.108-1.862-3.0161.1540.886-1.656-4.304-0.2310.408-2.472-3.016-0.428
03-2.121-4.3042.253-2.121-1.862-4.304-0.823-4.304-4.304-3.016-2.121-4.304-2.472-4.3041.661-3.016
04-1.213-4.304-4.304-3.016-3.016-4.304-4.304-4.3042.695-1.862-1.656-1.656-1.862-4.304-4.304-4.304
05-0.999-1.486-1.2132.668-3.016-3.016-4.304-2.472-4.304-4.304-2.472-2.121-3.016-4.304-4.304-1.656
06-1.1-3.016-4.304-2.472-1.656-4.304-4.304-2.472-0.999-4.304-4.304-4.3042.618-1.656-2.472-0.187
072.567-1.34-0.231-0.673-2.121-4.304-3.016-2.472-3.016-4.304-3.016-4.304-0.324-4.304-1.34-4.304
080.1980.7452.342-1.656-4.304-2.472-1.862-3.016-4.304-0.673-0.606-2.472-3.016-1.862-0.999-3.016
09-1.1-2.121-0.324-2.1210.693-1.213-1.656-0.9991.7630.6381.084-0.231-2.472-3.016-1.656-3.016
100.8560.0070.7281.035-0.029-0.428-3.016-0.3750.408-0.4280.007-0.105-0.907-1.486-1.34-0.823