We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGATA4
(GeneCards)
ModelGATA4_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusnvWGATAASvn
Best auROC (human)0.96
Best auROC (mouse)0.945
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)17
Aligned words463
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
HGNCHGNC:4173
EntrezGeneGeneID:2626
(SSTAR profile)
UniProt IDGATA4_HUMAN
UniProt ACP43694
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.302205
0.0005 11.855055
0.0001 16.19273
GTEx tissue expression atlas GATA4 expression
ReMap ChIP-seq dataset list GATA4 datasets
Motifs in JASPAR
MA0482.1 (Gata4; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0131.061.045.015.024.030.04.018.019.040.023.016.034.048.023.014.0
0279.05.02.022.085.04.01.089.068.05.00.022.042.02.01.018.0
033.00.0268.03.04.00.012.00.00.01.03.00.02.00.0148.01.0
048.00.00.01.01.00.00.00.0417.04.05.05.04.00.00.00.0
0510.06.08.0406.01.01.00.02.00.00.02.03.01.00.00.05.0
069.01.00.02.05.00.00.02.010.00.00.00.0386.05.02.023.0
07367.07.022.014.03.00.01.02.01.00.01.00.020.00.07.00.0
0834.059.0293.05.00.02.04.01.00.014.015.02.01.04.010.01.0
099.03.020.03.056.08.05.010.0164.053.083.022.02.01.05.01.0
1066.028.058.079.027.018.01.019.042.018.028.025.011.06.07.012.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.1070.7780.476-0.606-0.1450.075-1.862-0.428-0.3750.359-0.187-0.5430.1980.54-0.187-0.673
021.035-1.656-2.472-0.2311.108-1.862-3.0161.1540.886-1.656-4.304-0.2310.408-2.472-3.016-0.428
03-2.121-4.3042.253-2.121-1.862-4.304-0.823-4.304-4.304-3.016-2.121-4.304-2.472-4.3041.661-3.016
04-1.213-4.304-4.304-3.016-3.016-4.304-4.304-4.3042.695-1.862-1.656-1.656-1.862-4.304-4.304-4.304
05-0.999-1.486-1.2132.668-3.016-3.016-4.304-2.472-4.304-4.304-2.472-2.121-3.016-4.304-4.304-1.656
06-1.1-3.016-4.304-2.472-1.656-4.304-4.304-2.472-0.999-4.304-4.304-4.3042.618-1.656-2.472-0.187
072.567-1.34-0.231-0.673-2.121-4.304-3.016-2.472-3.016-4.304-3.016-4.304-0.324-4.304-1.34-4.304
080.1980.7452.342-1.656-4.304-2.472-1.862-3.016-4.304-0.673-0.606-2.472-3.016-1.862-0.999-3.016
09-1.1-2.121-0.324-2.1210.693-1.213-1.656-0.9991.7630.6381.084-0.231-2.472-3.016-1.656-3.016
100.8560.0070.7281.035-0.029-0.428-3.016-0.3750.408-0.4280.007-0.105-0.907-1.486-1.34-0.823