We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGata4
ModelGATA4_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusndnndvWGATAARvn
Best auROC (human)0.947
Best auROC (mouse)0.949
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)17
Aligned words428
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
MGIMGI:95664
EntrezGeneGeneID:14463
(SSTAR profile)
UniProt IDGATA4_MOUSE
UniProt ACQ08369
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.61866
0.0005 11.74566
0.0001 16.294115
GTEx tissue expression atlas Gata4 expression
Motifs in JASPAR
MA0482.1 (Gata4; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0114.019.070.027.015.016.03.027.029.018.053.012.022.026.051.022.0
0227.09.026.018.030.011.04.034.059.031.052.035.018.09.027.034.0
0328.016.063.027.025.013.03.019.040.015.035.019.022.013.052.034.0
0453.010.034.018.040.05.04.08.065.013.064.011.045.04.033.017.0
0559.069.060.015.011.014.03.04.023.064.038.010.024.015.012.03.0
0699.01.02.015.093.06.00.063.088.01.03.021.027.00.01.04.0
071.00.0306.00.01.00.07.00.00.00.06.00.00.00.0103.00.0
082.00.00.00.00.00.00.00.0421.00.01.00.00.00.00.00.0
092.03.07.0411.00.00.00.00.00.00.00.01.00.00.00.00.0
102.00.00.00.01.00.02.00.07.00.00.00.0391.03.010.08.0
11378.09.011.03.03.00.00.00.010.01.01.00.08.00.00.00.0
1261.052.0270.016.01.03.06.00.03.02.07.00.00.00.03.00.0
1320.013.026.06.039.06.07.05.0145.045.093.03.04.05.07.00.0
1452.020.060.076.022.020.010.017.035.033.030.035.03.06.02.03.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.626-0.3270.9630.018-0.558-0.495-2.0740.0180.089-0.380.686-0.775-0.183-0.0190.648-0.183
020.018-1.053-0.019-0.380.122-0.86-1.8150.2460.7930.1550.6670.275-0.38-1.0530.0180.246
030.054-0.4950.8580.018-0.057-0.698-2.074-0.3270.407-0.5580.275-0.327-0.183-0.6980.6670.246
040.686-0.9520.246-0.380.407-1.609-1.815-1.1660.889-0.6980.873-0.860.524-1.8150.217-0.436
050.7930.9480.809-0.558-0.86-0.626-2.074-1.815-0.140.8730.356-0.952-0.098-0.558-0.775-2.074
061.308-2.971-2.425-0.5581.245-1.438-4.2640.8581.19-2.971-2.074-0.2290.018-4.264-2.971-1.815
07-2.971-4.2642.434-4.264-2.971-4.264-1.293-4.264-4.264-4.264-1.438-4.264-4.264-4.2641.347-4.264
08-2.425-4.264-4.264-4.264-4.264-4.264-4.264-4.2642.752-4.264-2.971-4.264-4.264-4.264-4.264-4.264
09-2.425-2.074-1.2932.728-4.264-4.264-4.264-4.264-4.264-4.264-4.264-2.971-4.264-4.264-4.264-4.264
10-2.425-4.264-4.264-4.264-2.971-4.264-2.425-4.264-1.293-4.264-4.264-4.2642.678-2.074-0.952-1.166
112.645-1.053-0.86-2.074-2.074-4.264-4.264-4.264-0.952-2.971-2.971-4.264-1.166-4.264-4.264-4.264
120.8260.6672.309-0.495-2.971-2.074-1.438-4.264-2.074-2.425-1.293-4.264-4.264-4.264-2.074-4.264
13-0.277-0.698-0.019-1.4380.382-1.438-1.293-1.6091.6880.5241.245-2.074-1.815-1.609-1.293-4.264
140.667-0.2770.8091.044-0.183-0.277-0.952-0.4360.2750.2170.1220.275-2.074-1.438-2.425-2.074