Model info
| Transcription factor | GATA5 (GeneCards) | ||||||||
| Model | GATA5_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WvMnWGATAWbnhdRhd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 13 | ||||||||
| TF family | GATA-type zinc fingers {2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
| HGNC | HGNC:15802 | ||||||||
| EntrezGene | GeneID:140628 (SSTAR profile) | ||||||||
| UniProt ID | GATA5_HUMAN | ||||||||
| UniProt AC | Q9BWX5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GATA5 expression | ||||||||
| ReMap ChIP-seq dataset list | GATA5 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4.034 | 1.009 | 1.121 | 6.836 |
| 02 | 5.155 | 3.81 | 3.026 | 1.009 |
| 03 | 9.19 | 1.793 | 1.009 | 1.009 |
| 04 | 3.922 | 2.129 | 4.147 | 2.802 |
| 05 | 6.836 | 0.0 | 2.129 | 4.034 |
| 06 | 0.0 | 0.0 | 13.0 | 0.0 |
| 07 | 13.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 13.0 |
| 09 | 8.966 | 0.0 | 0.0 | 4.034 |
| 10 | 8.966 | 0.0 | 1.905 | 2.129 |
| 11 | 1.009 | 5.94 | 2.914 | 3.138 |
| 12 | 2.017 | 2.802 | 2.017 | 6.164 |
| 13 | 2.017 | 3.81 | 1.905 | 5.267 |
| 14 | 5.716 | 1.009 | 4.034 | 2.241 |
| 15 | 5.043 | 0.0 | 6.948 | 1.009 |
| 16 | 5.155 | 4.034 | 1.009 | 2.802 |
| 17 | 2.522 | 1.513 | 3.53 | 5.435 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.184 | -0.858 | -0.792 | 0.653 |
| 02 | 0.399 | 0.135 | -0.059 | -0.858 |
| 03 | 0.927 | -0.469 | -0.858 | -0.858 |
| 04 | 0.159 | -0.34 | 0.207 | -0.122 |
| 05 | 0.653 | -1.803 | -0.34 | 0.184 |
| 06 | -1.803 | -1.803 | 1.254 | -1.803 |
| 07 | 1.254 | -1.803 | -1.803 | -1.803 |
| 08 | -1.803 | -1.803 | -1.803 | 1.254 |
| 09 | 0.904 | -1.803 | -1.803 | 0.184 |
| 10 | 0.904 | -1.803 | -0.424 | -0.34 |
| 11 | -0.858 | 0.525 | -0.09 | -0.029 |
| 12 | -0.381 | -0.122 | -0.381 | 0.559 |
| 13 | -0.381 | 0.135 | -0.424 | 0.418 |
| 14 | 0.491 | -0.858 | 0.184 | -0.3 |
| 15 | 0.379 | -1.803 | 0.668 | -0.858 |
| 16 | 0.399 | 0.184 | -0.858 | -0.122 |
| 17 | -0.207 | -0.591 | 0.07 | 0.446 |