Transcription factor | GATA5 (GeneCards) | ||||||||
Model | GATA5_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 17 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | WvMnWGATAWbnhdRhd | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 13 | ||||||||
TF family | GATA-type zinc fingers {2.2.1} | ||||||||
TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
HGNC | HGNC:15802 | ||||||||
EntrezGene | GeneID:140628 (SSTAR profile) | ||||||||
UniProt ID | GATA5_HUMAN | ||||||||
UniProt AC | Q9BWX5 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | GATA5 expression | ||||||||
ReMap ChIP-seq dataset list | GATA5 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 4.034 | 1.009 | 1.121 | 6.836 |
02 | 5.155 | 3.81 | 3.026 | 1.009 |
03 | 9.19 | 1.793 | 1.009 | 1.009 |
04 | 3.922 | 2.129 | 4.147 | 2.802 |
05 | 6.836 | 0.0 | 2.129 | 4.034 |
06 | 0.0 | 0.0 | 13.0 | 0.0 |
07 | 13.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 13.0 |
09 | 8.966 | 0.0 | 0.0 | 4.034 |
10 | 8.966 | 0.0 | 1.905 | 2.129 |
11 | 1.009 | 5.94 | 2.914 | 3.138 |
12 | 2.017 | 2.802 | 2.017 | 6.164 |
13 | 2.017 | 3.81 | 1.905 | 5.267 |
14 | 5.716 | 1.009 | 4.034 | 2.241 |
15 | 5.043 | 0.0 | 6.948 | 1.009 |
16 | 5.155 | 4.034 | 1.009 | 2.802 |
17 | 2.522 | 1.513 | 3.53 | 5.435 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.184 | -0.858 | -0.792 | 0.653 |
02 | 0.399 | 0.135 | -0.059 | -0.858 |
03 | 0.927 | -0.469 | -0.858 | -0.858 |
04 | 0.159 | -0.34 | 0.207 | -0.122 |
05 | 0.653 | -1.803 | -0.34 | 0.184 |
06 | -1.803 | -1.803 | 1.254 | -1.803 |
07 | 1.254 | -1.803 | -1.803 | -1.803 |
08 | -1.803 | -1.803 | -1.803 | 1.254 |
09 | 0.904 | -1.803 | -1.803 | 0.184 |
10 | 0.904 | -1.803 | -0.424 | -0.34 |
11 | -0.858 | 0.525 | -0.09 | -0.029 |
12 | -0.381 | -0.122 | -0.381 | 0.559 |
13 | -0.381 | 0.135 | -0.424 | 0.418 |
14 | 0.491 | -0.858 | 0.184 | -0.3 |
15 | 0.379 | -1.803 | 0.668 | -0.858 |
16 | 0.399 | 0.184 | -0.858 | -0.122 |
17 | -0.207 | -0.591 | 0.07 | 0.446 |