We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGATA5
(GeneCards)
ModelGATA5_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length17
Quality
D
Motif rank
0
ConsensusWvMnWGATAWbnhdRhd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words13
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
HGNCHGNC:15802
EntrezGeneGeneID:140628
(SSTAR profile)
UniProt IDGATA5_HUMAN
UniProt ACQ9BWX5
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.64986
0.0005 6.28556
0.0001 7.57596
GTEx tissue expression atlas GATA5 expression
ReMap ChIP-seq dataset list GATA5 datasets
Motifs in JASPAR
MA0766.1 (GATA5; Homo sapiens)
PCM
ACGT
014.0341.0091.1216.836
025.1553.813.0261.009
039.191.7931.0091.009
043.9222.1294.1472.802
056.8360.02.1294.034
060.00.013.00.0
0713.00.00.00.0
080.00.00.013.0
098.9660.00.04.034
108.9660.01.9052.129
111.0095.942.9143.138
122.0172.8022.0176.164
132.0173.811.9055.267
145.7161.0094.0342.241
155.0430.06.9481.009
165.1554.0341.0092.802
172.5221.5133.535.435
PWM
ACGT
010.184-0.858-0.7920.653
020.3990.135-0.059-0.858
030.927-0.469-0.858-0.858
040.159-0.340.207-0.122
050.653-1.803-0.340.184
06-1.803-1.8031.254-1.803
071.254-1.803-1.803-1.803
08-1.803-1.803-1.8031.254
090.904-1.803-1.8030.184
100.904-1.803-0.424-0.34
11-0.8580.525-0.09-0.029
12-0.381-0.122-0.3810.559
13-0.3810.135-0.4240.418
140.491-0.8580.184-0.3
150.379-1.8030.668-0.858
160.3990.184-0.858-0.122
17-0.207-0.5910.070.446