We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGATA6
(GeneCards)
ModelGATA6_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnnnnnnvWGATAASvn
Best auROC (human)0.977
Best auROC (mouse)0.946
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)7
Aligned words394
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
HGNCHGNC:4174
EntrezGeneGeneID:2627
(SSTAR profile)
UniProt IDGATA6_HUMAN
UniProt ACQ92908
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.40111
0.0005 11.542860000000001
0.0001 16.194560000000003
GTEx tissue expression atlas GATA6 expression
ReMap ChIP-seq dataset list GATA6 datasets
Motifs in JASPAR
MA1104.1 (GATA6; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0122.016.021.026.041.039.04.010.027.057.030.011.014.027.034.011.0
0238.022.024.020.045.040.06.048.019.025.029.016.012.023.015.08.0
0329.022.046.017.043.034.05.028.010.024.019.021.07.022.038.025.0
0423.020.030.016.036.029.05.032.030.031.027.020.012.020.025.034.0
0526.012.032.031.043.023.08.026.024.015.033.015.020.022.032.028.0
0615.044.043.011.022.037.03.010.016.046.035.08.029.032.024.015.0
0769.00.03.010.056.04.00.099.076.03.00.026.025.00.00.019.0
081.00.0225.00.00.00.07.00.00.00.03.00.00.01.0153.00.0
091.00.00.00.00.01.00.00.0382.01.02.03.00.00.00.00.0
104.02.02.0375.00.01.00.01.00.00.00.02.00.00.00.03.0
113.00.01.00.03.00.00.00.00.02.00.00.0358.01.00.022.0
12343.03.011.07.03.00.00.00.01.00.00.00.018.00.03.01.0
1332.052.0277.04.01.00.01.01.02.05.06.01.00.02.04.02.0
1415.07.010.03.037.08.010.04.0123.054.0105.06.02.00.04.02.0
1530.020.066.061.021.018.00.030.049.027.035.018.07.01.02.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.101-0.413-0.1470.0640.5140.464-1.733-0.870.1010.8410.205-0.778-0.5430.1010.329-0.778
020.439-0.101-0.015-0.1950.6060.489-1.3570.67-0.2450.0250.171-0.413-0.693-0.057-0.476-1.084
030.171-0.1010.628-0.3540.5610.329-1.5270.137-0.87-0.015-0.245-0.147-1.211-0.1010.4390.025
04-0.057-0.1950.205-0.4130.3850.171-1.5270.2690.2050.2370.101-0.195-0.693-0.1950.0250.329
050.064-0.6930.2690.2370.561-0.057-1.0840.064-0.015-0.4760.299-0.476-0.195-0.1010.2690.137
06-0.4760.5840.561-0.778-0.1010.412-1.993-0.87-0.4130.6280.357-1.0840.1710.269-0.015-0.476
071.031-4.195-1.993-0.870.823-1.733-4.1951.391.127-1.993-4.1950.0640.025-4.195-4.195-0.245
08-2.892-4.1952.209-4.195-4.195-4.195-1.211-4.195-4.195-4.195-1.993-4.195-4.195-2.8921.824-4.195
09-2.892-4.195-4.195-4.195-4.195-2.892-4.195-4.1952.738-2.892-2.345-1.993-4.195-4.195-4.195-4.195
10-1.733-2.345-2.3452.719-4.195-2.892-4.195-2.892-4.195-4.195-4.195-2.345-4.195-4.195-4.195-1.993
11-1.993-4.195-2.892-4.195-1.993-4.195-4.195-4.195-4.195-2.345-4.195-4.1952.673-2.892-4.195-0.101
122.63-1.993-0.778-1.211-1.993-4.195-4.195-4.195-2.892-4.195-4.195-4.195-0.298-4.195-1.993-2.892
130.2690.752.417-1.733-2.892-4.195-2.892-2.892-2.345-1.527-1.357-2.892-4.195-2.345-1.733-2.345
14-0.476-1.211-0.87-1.9930.412-1.084-0.87-1.7331.6060.7871.449-1.357-2.345-4.195-1.733-2.345
150.205-0.1950.9870.908-0.147-0.298-4.1950.2050.6910.1010.357-0.298-1.211-2.892-2.345-1.527