Model info
| Transcription factor | GATA6 (GeneCards) | ||||||||
| Model | GATA6_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvAGATAAGRddd | ||||||||
| Best auROC (human) | 0.97 | ||||||||
| Best auROC (mouse) | 0.932 | ||||||||
| Peak sets in benchmark (human) | 29 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers {2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
| HGNC | HGNC:4174 | ||||||||
| EntrezGene | GeneID:2627 (SSTAR profile) | ||||||||
| UniProt ID | GATA6_HUMAN | ||||||||
| UniProt AC | Q92908 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GATA6 expression | ||||||||
| ReMap ChIP-seq dataset list | GATA6 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 169.0 | 77.0 | 166.0 | 88.0 |
| 02 | 123.0 | 204.0 | 133.0 | 40.0 |
| 03 | 364.0 | 0.0 | 3.0 | 133.0 |
| 04 | 0.0 | 0.0 | 500.0 | 0.0 |
| 05 | 497.0 | 0.0 | 0.0 | 3.0 |
| 06 | 5.0 | 1.0 | 0.0 | 494.0 |
| 07 | 459.0 | 5.0 | 4.0 | 32.0 |
| 08 | 475.0 | 2.0 | 14.0 | 9.0 |
| 09 | 18.0 | 54.0 | 424.0 | 4.0 |
| 10 | 300.0 | 51.0 | 132.0 | 17.0 |
| 11 | 116.0 | 72.0 | 81.0 | 231.0 |
| 12 | 261.0 | 65.0 | 72.0 | 102.0 |
| 13 | 251.0 | 65.0 | 98.0 | 86.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.298 | -0.477 | 0.281 | -0.346 |
| 02 | -0.016 | 0.485 | 0.061 | -1.114 |
| 03 | 1.061 | -4.4 | -3.325 | 0.061 |
| 04 | -4.4 | -4.4 | 1.377 | -4.4 |
| 05 | 1.371 | -4.4 | -4.4 | -3.325 |
| 06 | -2.961 | -3.903 | -4.4 | 1.365 |
| 07 | 1.292 | -2.961 | -3.126 | -1.328 |
| 08 | 1.326 | -3.573 | -2.096 | -2.484 |
| 09 | -1.868 | -0.823 | 1.213 | -3.126 |
| 10 | 0.868 | -0.879 | 0.054 | -1.92 |
| 11 | -0.074 | -0.543 | -0.427 | 0.608 |
| 12 | 0.73 | -0.643 | -0.543 | -0.201 |
| 13 | 0.691 | -0.643 | -0.24 | -0.368 |