We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGATA6
(GeneCards)
ModelGATA6_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusdvAGATAAGRddd
Best auROC (human)0.97
Best auROC (mouse)0.932
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)7
Aligned words500
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
HGNCHGNC:4174
EntrezGeneGeneID:2627
(SSTAR profile)
UniProt IDGATA6_HUMAN
UniProt ACQ92908
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.66991
0.0005 5.72827
0.0001 8.012620000000002
GTEx tissue expression atlas GATA6 expression
ReMap ChIP-seq dataset list GATA6 datasets
Motifs in JASPAR
PCM
ACGT
01169.077.0166.088.0
02123.0204.0133.040.0
03364.00.03.0133.0
040.00.0500.00.0
05497.00.00.03.0
065.01.00.0494.0
07459.05.04.032.0
08475.02.014.09.0
0918.054.0424.04.0
10300.051.0132.017.0
11116.072.081.0231.0
12261.065.072.0102.0
13251.065.098.086.0
PWM
ACGT
010.298-0.4770.281-0.346
02-0.0160.4850.061-1.114
031.061-4.4-3.3250.061
04-4.4-4.41.377-4.4
051.371-4.4-4.4-3.325
06-2.961-3.903-4.41.365
071.292-2.961-3.126-1.328
081.326-3.573-2.096-2.484
09-1.868-0.8231.213-3.126
100.868-0.8790.054-1.92
11-0.074-0.543-0.4270.608
120.73-0.643-0.543-0.201
130.691-0.643-0.24-0.368