Model info
| Transcription factor | GBX1 (GeneCards) | ||||||||
| Model | GBX1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bTAATTAvbnhhWWWdd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 38677 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | GBX (Gastrulation brain homeobox) {3.1.1.11} | ||||||||
| HGNC | HGNC:4185 | ||||||||
| EntrezGene | GeneID:2636 (SSTAR profile) | ||||||||
| UniProt ID | GBX1_HUMAN | ||||||||
| UniProt AC | Q14549 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GBX1 expression | ||||||||
| ReMap ChIP-seq dataset list | GBX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4426.645 | 13584.49 | 7408.515 | 10726.166 |
| 02 | 1453.578 | 3944.734 | 1328.552 | 29418.952 |
| 03 | 35723.104 | 127.639 | 205.754 | 89.32 |
| 04 | 36145.356 | 0.153 | 0.153 | 0.153 |
| 05 | 0.0 | 0.0 | 12.159 | 36133.657 |
| 06 | 0.0 | 179.801 | 249.306 | 35716.71 |
| 07 | 23323.929 | 0.0 | 12796.955 | 24.932 |
| 08 | 9492.454 | 7730.571 | 17247.426 | 1675.365 |
| 09 | 4167.384 | 13714.823 | 6197.548 | 12066.061 |
| 10 | 7143.393 | 10997.391 | 6997.448 | 11007.584 |
| 11 | 12177.181 | 8987.831 | 4154.259 | 10826.545 |
| 12 | 15274.676 | 5705.056 | 2343.167 | 12822.917 |
| 13 | 16590.661 | 2488.657 | 1026.158 | 16040.34 |
| 14 | 18712.865 | 1013.534 | 695.139 | 15724.278 |
| 15 | 16170.377 | 1084.377 | 1135.551 | 17755.511 |
| 16 | 11498.472 | 2409.51 | 3307.609 | 18930.225 |
| 17 | 10693.833 | 4713.222 | 6879.747 | 13859.015 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.713 | 0.408 | -0.199 | 0.171 |
| 02 | -1.826 | -0.829 | -1.915 | 1.18 |
| 03 | 1.374 | -4.24 | -3.77 | -4.588 |
| 04 | 1.386 | -8.088 | -8.088 | -8.088 |
| 05 | -8.145 | -8.145 | -6.416 | 1.386 |
| 06 | -8.145 | -3.903 | -3.58 | 1.374 |
| 07 | 0.948 | -8.145 | 0.348 | -5.793 |
| 08 | 0.049 | -0.156 | 0.646 | -1.684 |
| 09 | -0.774 | 0.417 | -0.377 | 0.289 |
| 10 | -0.235 | 0.196 | -0.256 | 0.197 |
| 11 | 0.298 | -0.005 | -0.777 | 0.181 |
| 12 | 0.525 | -0.46 | -1.349 | 0.35 |
| 13 | 0.607 | -1.289 | -2.173 | 0.574 |
| 14 | 0.728 | -2.186 | -2.561 | 0.554 |
| 15 | 0.582 | -2.118 | -2.072 | 0.675 |
| 16 | 0.241 | -1.321 | -1.005 | 0.739 |
| 17 | 0.168 | -0.651 | -0.273 | 0.428 |