We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGBX1
(GeneCards)
ModelGBX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length17
Quality
D
Motif rank
0
ConsensusbTAATTAvbnhhWWWdd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words38677
TF familyHOX-related factors {3.1.1}
TF subfamilyGBX (Gastrulation brain homeobox) {3.1.1.11}
HGNCHGNC:4185
EntrezGeneGeneID:2636
(SSTAR profile)
UniProt IDGBX1_HUMAN
UniProt ACQ14549
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.15621
0.0005 6.4379100000000005
0.0001 8.717410000000001
GTEx tissue expression atlas GBX1 expression
ReMap ChIP-seq dataset list GBX1 datasets
Motifs in JASPAR
PCM
ACGT
014426.64513584.497408.51510726.166
021453.5783944.7341328.55229418.952
0335723.104127.639205.75489.32
0436145.3560.1530.1530.153
050.00.012.15936133.657
060.0179.801249.30635716.71
0723323.9290.012796.95524.932
089492.4547730.57117247.4261675.365
094167.38413714.8236197.54812066.061
107143.39310997.3916997.44811007.584
1112177.1818987.8314154.25910826.545
1215274.6765705.0562343.16712822.917
1316590.6612488.6571026.15816040.34
1418712.8651013.534695.13915724.278
1516170.3771084.3771135.55117755.511
1611498.4722409.513307.60918930.225
1710693.8334713.2226879.74713859.015
PWM
ACGT
01-0.7130.408-0.1990.171
02-1.826-0.829-1.9151.18
031.374-4.24-3.77-4.588
041.386-8.088-8.088-8.088
05-8.145-8.145-6.4161.386
06-8.145-3.903-3.581.374
070.948-8.1450.348-5.793
080.049-0.1560.646-1.684
09-0.7740.417-0.3770.289
10-0.2350.196-0.2560.197
110.298-0.005-0.7770.181
120.525-0.46-1.3490.35
130.607-1.289-2.1730.574
140.728-2.186-2.5610.554
150.582-2.118-2.0720.675
160.241-1.321-1.0050.739
170.168-0.651-0.2730.428