GCM1_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

GCM1
(GeneCards)

Model

GCM1_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

14

Quality

D

Motif rank

0

Consensus

hWnATGMKGGYhbb

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

12

TF family

GCM factors {7.2.1}

TF subfamily

GCMa (GCM1) {7.2.1.0.1}

HGNC

EntrezGene

GeneID:8521
(SSTAR profile)

UniProt ID

UniProt AC

Q9NP62
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.86446
0.0005	5.53281
0.0001	6.99066

GTEx tissue expression atlas

GCM1 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0646.1 (GCM1; Homo sapiens)

PCM

	A	C	G	T
01	3.778	4.222	1.0	3.0
02	5.222	1.0	0.778	5.0
03	3.0	4.111	2.889	2.0
04	9.889	2.111	0.0	0.0
05	0.0	0.0	0.0	12.0
06	0.0	0.0	12.0	0.0
07	2.111	7.889	0.0	2.0
08	0.0	1.111	7.0	3.889
09	0.0	0.0	12.0	0.0
10	0.0	0.0	12.0	0.0
11	1.0	4.0	0.778	6.222
12	4.778	3.111	2.0	2.111
13	1.0	3.889	3.111	4.0
14	1.0	2.222	4.0	4.778

PWM

	A	C	G	T
01	0.195	0.291	-0.804	0.0
02	0.479	-0.804	-0.951	0.44
03	0.0	0.268	-0.031	-0.323
04	1.066	-0.282	-1.763	-1.763
05	-1.763	-1.763	-1.763	1.249
06	-1.763	-1.763	1.249	-1.763
07	-0.282	0.854	-1.763	-0.323
08	-1.763	-0.737	0.744	0.22
09	-1.763	-1.763	1.249	-1.763
10	-1.763	-1.763	1.249	-1.763
11	-0.804	0.244	-0.951	0.636
12	0.399	0.03	-0.323	-0.282
13	-0.804	0.22	0.03	0.244
14	-0.804	-0.242	0.244	0.399