We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGCM1
(GeneCards)
ModelGCM1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length14
Quality
D
Motif rank
0
ConsensushWnATGMKGGYhbb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words12
TF familyGCM factors {7.2.1}
TF subfamilyGCMa (GCM1) {7.2.1.0.1}
HGNCHGNC:4197
EntrezGeneGeneID:8521
(SSTAR profile)
UniProt IDGCM1_HUMAN
UniProt ACQ9NP62
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.86446
0.0005 5.53281
0.0001 6.99066
GTEx tissue expression atlas GCM1 expression
ReMap ChIP-seq dataset list GCM1 datasets
Motifs in JASPAR
PCM
ACGT
013.7784.2221.03.0
025.2221.00.7785.0
033.04.1112.8892.0
049.8892.1110.00.0
050.00.00.012.0
060.00.012.00.0
072.1117.8890.02.0
080.01.1117.03.889
090.00.012.00.0
100.00.012.00.0
111.04.00.7786.222
124.7783.1112.02.111
131.03.8893.1114.0
141.02.2224.04.778
PWM
ACGT
010.1950.291-0.8040.0
020.479-0.804-0.9510.44
030.00.268-0.031-0.323
041.066-0.282-1.763-1.763
05-1.763-1.763-1.7631.249
06-1.763-1.7631.249-1.763
07-0.2820.854-1.763-0.323
08-1.763-0.7370.7440.22
09-1.763-1.7631.249-1.763
10-1.763-1.7631.249-1.763
11-0.8040.244-0.9510.636
120.3990.03-0.323-0.282
13-0.8040.220.030.244
14-0.804-0.2420.2440.399