Model info
| Transcription factor | Gcm1 | ||||||||
| Model | GCM1_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hWnATGMKGGYhbb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 12 | ||||||||
| TF family | GCM factors {7.2.1} | ||||||||
| TF subfamily | GCMa (GCM1) {7.2.1.0.1} | ||||||||
| MGI | MGI:108045 | ||||||||
| EntrezGene | GeneID:14531 (SSTAR profile) | ||||||||
| UniProt ID | GCM1_MOUSE | ||||||||
| UniProt AC | P70348 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Gcm1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.778 | 4.222 | 1.0 | 3.0 |
| 02 | 5.222 | 1.0 | 0.778 | 5.0 |
| 03 | 3.0 | 4.111 | 2.889 | 2.0 |
| 04 | 9.889 | 2.111 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 12.0 |
| 06 | 0.0 | 0.0 | 12.0 | 0.0 |
| 07 | 2.111 | 7.889 | 0.0 | 2.0 |
| 08 | 0.0 | 1.111 | 7.0 | 3.889 |
| 09 | 0.0 | 0.0 | 12.0 | 0.0 |
| 10 | 0.0 | 0.0 | 12.0 | 0.0 |
| 11 | 1.0 | 4.0 | 0.778 | 6.222 |
| 12 | 4.778 | 3.111 | 2.0 | 2.111 |
| 13 | 1.0 | 3.889 | 3.111 | 4.0 |
| 14 | 1.0 | 2.222 | 4.0 | 4.778 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.195 | 0.291 | -0.804 | 0.0 |
| 02 | 0.479 | -0.804 | -0.951 | 0.44 |
| 03 | 0.0 | 0.268 | -0.031 | -0.323 |
| 04 | 1.066 | -0.282 | -1.763 | -1.763 |
| 05 | -1.763 | -1.763 | -1.763 | 1.249 |
| 06 | -1.763 | -1.763 | 1.249 | -1.763 |
| 07 | -0.282 | 0.854 | -1.763 | -0.323 |
| 08 | -1.763 | -0.737 | 0.744 | 0.22 |
| 09 | -1.763 | -1.763 | 1.249 | -1.763 |
| 10 | -1.763 | -1.763 | 1.249 | -1.763 |
| 11 | -0.804 | 0.244 | -0.951 | 0.636 |
| 12 | 0.399 | 0.03 | -0.323 | -0.282 |
| 13 | -0.804 | 0.22 | 0.03 | 0.244 |
| 14 | -0.804 | -0.242 | 0.244 | 0.399 |