Transcription factor | Gcm1 | ||||||||
Model | GCM1_MOUSE.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 14 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | hWnATGMKGGYhbb | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 12 | ||||||||
TF family | GCM factors {7.2.1} | ||||||||
TF subfamily | GCMa (GCM1) {7.2.1.0.1} | ||||||||
MGI | MGI:108045 | ||||||||
EntrezGene | GeneID:14531 (SSTAR profile) | ||||||||
UniProt ID | GCM1_MOUSE | ||||||||
UniProt AC | P70348 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Gcm1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 3.778 | 4.222 | 1.0 | 3.0 |
02 | 5.222 | 1.0 | 0.778 | 5.0 |
03 | 3.0 | 4.111 | 2.889 | 2.0 |
04 | 9.889 | 2.111 | 0.0 | 0.0 |
05 | 0.0 | 0.0 | 0.0 | 12.0 |
06 | 0.0 | 0.0 | 12.0 | 0.0 |
07 | 2.111 | 7.889 | 0.0 | 2.0 |
08 | 0.0 | 1.111 | 7.0 | 3.889 |
09 | 0.0 | 0.0 | 12.0 | 0.0 |
10 | 0.0 | 0.0 | 12.0 | 0.0 |
11 | 1.0 | 4.0 | 0.778 | 6.222 |
12 | 4.778 | 3.111 | 2.0 | 2.111 |
13 | 1.0 | 3.889 | 3.111 | 4.0 |
14 | 1.0 | 2.222 | 4.0 | 4.778 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.195 | 0.291 | -0.804 | 0.0 |
02 | 0.479 | -0.804 | -0.951 | 0.44 |
03 | 0.0 | 0.268 | -0.031 | -0.323 |
04 | 1.066 | -0.282 | -1.763 | -1.763 |
05 | -1.763 | -1.763 | -1.763 | 1.249 |
06 | -1.763 | -1.763 | 1.249 | -1.763 |
07 | -0.282 | 0.854 | -1.763 | -0.323 |
08 | -1.763 | -0.737 | 0.744 | 0.22 |
09 | -1.763 | -1.763 | 1.249 | -1.763 |
10 | -1.763 | -1.763 | 1.249 | -1.763 |
11 | -0.804 | 0.244 | -0.951 | 0.636 |
12 | 0.399 | 0.03 | -0.323 | -0.282 |
13 | -0.804 | 0.22 | 0.03 | 0.244 |
14 | -0.804 | -0.242 | 0.244 | 0.399 |