Model info
| Transcription factor | GCM2 (GeneCards) | ||||||||
| Model | GCM2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bRTGCGGGTdn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 352 | ||||||||
| TF family | GCM factors {7.2.1} | ||||||||
| TF subfamily | GCMb (GCM2) {7.2.1.0.2} | ||||||||
| HGNC | HGNC:4198 | ||||||||
| EntrezGene | GeneID:9247 (SSTAR profile) | ||||||||
| UniProt ID | GCM2_HUMAN | ||||||||
| UniProt AC | O75603 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GCM2 expression | ||||||||
| ReMap ChIP-seq dataset list | GCM2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 39.75 | 87.75 | 114.75 | 109.75 |
| 02 | 268.0 | 24.0 | 36.0 | 24.0 |
| 03 | 0.0 | 0.0 | 0.0 | 352.0 |
| 04 | 16.0 | 1.0 | 335.0 | 0.0 |
| 05 | 1.0 | 349.0 | 0.0 | 2.0 |
| 06 | 0.0 | 0.0 | 349.0 | 3.0 |
| 07 | 0.0 | 0.0 | 352.0 | 0.0 |
| 08 | 0.75 | 0.75 | 349.75 | 0.75 |
| 09 | 9.5 | 50.5 | 2.5 | 289.5 |
| 10 | 194.75 | 23.75 | 80.75 | 52.75 |
| 11 | 46.75 | 87.75 | 99.75 | 117.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.775 | -0.003 | 0.262 | 0.218 |
| 02 | 1.103 | -1.257 | -0.87 | -1.257 |
| 03 | -4.111 | -4.111 | -4.111 | 1.374 |
| 04 | -1.634 | -3.591 | 1.325 | -4.111 |
| 05 | -3.591 | 1.365 | -4.111 | -3.251 |
| 06 | -4.111 | -4.111 | 1.365 | -2.997 |
| 07 | -4.111 | -4.111 | 1.374 | -4.111 |
| 08 | -3.698 | -3.698 | 1.368 | -3.698 |
| 09 | -2.099 | -0.543 | -3.116 | 1.179 |
| 10 | 0.785 | -1.266 | -0.085 | -0.501 |
| 11 | -0.618 | -0.003 | 0.123 | 0.287 |