GCM2_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

GCM2
(GeneCards)

Model

GCM2_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

HT-SELEX

Model release

HOCOMOCOv10

Model length

11

Quality

D

Motif rank

0

Consensus

bRTGCGGGTdn

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

352

TF family

GCM factors {7.2.1}

TF subfamily

GCMb (GCM2) {7.2.1.0.2}

HGNC

EntrezGene

GeneID:9247
(SSTAR profile)

UniProt ID

UniProt AC

O75603
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	1.61665
0.0005	2.846705
0.0001	5.1093

GTEx tissue expression atlas

GCM2 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0767.1 (GCM2; Homo sapiens)

PCM

	A	C	G	T
01	39.75	87.75	114.75	109.75
02	268.0	24.0	36.0	24.0
03	0.0	0.0	0.0	352.0
04	16.0	1.0	335.0	0.0
05	1.0	349.0	0.0	2.0
06	0.0	0.0	349.0	3.0
07	0.0	0.0	352.0	0.0
08	0.75	0.75	349.75	0.75
09	9.5	50.5	2.5	289.5
10	194.75	23.75	80.75	52.75
11	46.75	87.75	99.75	117.75

PWM

	A	C	G	T
01	-0.775	-0.003	0.262	0.218
02	1.103	-1.257	-0.87	-1.257
03	-4.111	-4.111	-4.111	1.374
04	-1.634	-3.591	1.325	-4.111
05	-3.591	1.365	-4.111	-3.251
06	-4.111	-4.111	1.365	-2.997
07	-4.111	-4.111	1.374	-4.111
08	-3.698	-3.698	1.368	-3.698
09	-2.099	-0.543	-3.116	1.179
10	0.785	-1.266	-0.085	-0.501
11	-0.618	-0.003	0.123	0.287