Model info
| Transcription factor | NR3C1 (GeneCards) | ||||||||
| Model | GCR_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dGdACWnAvWGTnCh | ||||||||
| Best auROC (human) | 0.978 | ||||||||
| Best auROC (mouse) | 0.989 | ||||||||
| Peak sets in benchmark (human) | 143 | ||||||||
| Peak sets in benchmark (mouse) | 119 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
| TF subfamily | GR-like receptors (NR3C) {2.1.1.1} | ||||||||
| HGNC | HGNC:7978 | ||||||||
| EntrezGene | GeneID:2908 (SSTAR profile) | ||||||||
| UniProt ID | GCR_HUMAN | ||||||||
| UniProt AC | P04150 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NR3C1 expression | ||||||||
| ReMap ChIP-seq dataset list | NR3C1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 235.0 | 23.0 | 177.0 | 65.0 |
| 02 | 46.0 | 5.0 | 419.0 | 30.0 |
| 03 | 222.0 | 78.0 | 109.0 | 91.0 |
| 04 | 449.0 | 13.0 | 14.0 | 24.0 |
| 05 | 6.0 | 474.0 | 13.0 | 7.0 |
| 06 | 381.0 | 14.0 | 45.0 | 60.0 |
| 07 | 79.0 | 149.0 | 176.0 | 96.0 |
| 08 | 316.0 | 184.0 | 0.0 | 0.0 |
| 09 | 201.0 | 142.0 | 109.0 | 48.0 |
| 10 | 90.0 | 27.0 | 18.0 | 365.0 |
| 11 | 7.0 | 11.0 | 477.0 | 5.0 |
| 12 | 26.0 | 19.0 | 12.0 | 443.0 |
| 13 | 95.0 | 133.0 | 91.0 | 181.0 |
| 14 | 31.0 | 424.0 | 3.0 | 42.0 |
| 15 | 88.0 | 176.0 | 13.0 | 223.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.626 | -1.64 | 0.344 | -0.643 |
| 02 | -0.979 | -2.961 | 1.201 | -1.389 |
| 03 | 0.569 | -0.464 | -0.135 | -0.313 |
| 04 | 1.27 | -2.163 | -2.096 | -1.6 |
| 05 | -2.819 | 1.324 | -2.163 | -2.694 |
| 06 | 1.106 | -2.096 | -1.0 | -0.721 |
| 07 | -0.452 | 0.174 | 0.339 | -0.26 |
| 08 | 0.92 | 0.383 | -4.4 | -4.4 |
| 09 | 0.47 | 0.126 | -0.135 | -0.938 |
| 10 | -0.324 | -1.489 | -1.868 | 1.063 |
| 11 | -2.694 | -2.311 | 1.33 | -2.961 |
| 12 | -1.525 | -1.818 | -2.234 | 1.256 |
| 13 | -0.271 | 0.061 | -0.313 | 0.366 |
| 14 | -1.358 | 1.213 | -3.325 | -1.067 |
| 15 | -0.346 | 0.339 | -2.163 | 0.573 |