We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR3C1
(GeneCards)
ModelGCR_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusdGdACWnAvWGTnCh
Best auROC (human)0.978
Best auROC (mouse)0.989
Peak sets in benchmark (human)143
Peak sets in benchmark (mouse)119
Aligned words500
TF familySteroid hormone receptors (NR3) {2.1.1}
TF subfamilyGR-like receptors (NR3C) {2.1.1.1}
HGNCHGNC:7978
EntrezGeneGeneID:2908
(SSTAR profile)
UniProt IDGCR_HUMAN
UniProt ACP04150
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.49651
0.0005 5.45101
0.0001 7.45031
GTEx tissue expression atlas NR3C1 expression
ReMap ChIP-seq dataset list NR3C1 datasets
Motifs in JASPAR
PCM
ACGT
01235.023.0177.065.0
0246.05.0419.030.0
03222.078.0109.091.0
04449.013.014.024.0
056.0474.013.07.0
06381.014.045.060.0
0779.0149.0176.096.0
08316.0184.00.00.0
09201.0142.0109.048.0
1090.027.018.0365.0
117.011.0477.05.0
1226.019.012.0443.0
1395.0133.091.0181.0
1431.0424.03.042.0
1588.0176.013.0223.0
PWM
ACGT
010.626-1.640.344-0.643
02-0.979-2.9611.201-1.389
030.569-0.464-0.135-0.313
041.27-2.163-2.096-1.6
05-2.8191.324-2.163-2.694
061.106-2.096-1.0-0.721
07-0.4520.1740.339-0.26
080.920.383-4.4-4.4
090.470.126-0.135-0.938
10-0.324-1.489-1.8681.063
11-2.694-2.3111.33-2.961
12-1.525-1.818-2.2341.256
13-0.2710.061-0.3130.366
14-1.3581.213-3.325-1.067
15-0.3460.339-2.1630.573