We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR3C1
(GeneCards)
ModelGCR_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
1
ConsensushvRGRACAbdvh
Best auROC (human)0.93
Best auROC (mouse)0.925
Peak sets in benchmark (human)143
Peak sets in benchmark (mouse)119
Aligned words500
TF familySteroid hormone receptors (NR3) {2.1.1}
TF subfamilyGR-like receptors (NR3C) {2.1.1.1}
HGNCHGNC:7978
EntrezGeneGeneID:2908
(SSTAR profile)
UniProt IDGCR_HUMAN
UniProt ACP04150
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.468014999999999
0.0005 6.503095
0.0001 7.988315
GTEx tissue expression atlas NR3C1 expression
ReMap ChIP-seq dataset list NR3C1 datasets
Motifs in JASPAR
PCM
ACGT
01192.0153.055.0100.0
02213.070.0153.064.0
03247.01.0246.06.0
042.01.0497.00.0
05305.022.098.075.0
06494.04.02.00.0
071.0497.02.00.0
08491.00.01.08.0
0961.094.0267.078.0
10244.041.089.0126.0
11172.0122.0156.050.0
12143.0105.027.0225.0
PWM
ACGT
010.4250.2-0.805-0.22
020.528-0.570.2-0.658
030.675-3.9030.671-2.819
04-3.573-3.9031.371-4.4
050.885-1.681-0.24-0.503
061.365-3.126-3.573-4.4
07-3.9031.371-3.573-4.4
081.359-4.4-3.903-2.584
09-0.705-0.2810.752-0.464
100.663-1.09-0.3350.008
110.316-0.0240.219-0.898
120.133-0.172-1.4890.582