Model info
| Transcription factor | NR3C1 (GeneCards) | ||||||||
| Model | GCR_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | hvRGRACAbdvh | ||||||||
| Best auROC (human) | 0.93 | ||||||||
| Best auROC (mouse) | 0.925 | ||||||||
| Peak sets in benchmark (human) | 143 | ||||||||
| Peak sets in benchmark (mouse) | 119 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
| TF subfamily | GR-like receptors (NR3C) {2.1.1.1} | ||||||||
| HGNC | HGNC:7978 | ||||||||
| EntrezGene | GeneID:2908 (SSTAR profile) | ||||||||
| UniProt ID | GCR_HUMAN | ||||||||
| UniProt AC | P04150 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NR3C1 expression | ||||||||
| ReMap ChIP-seq dataset list | NR3C1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 192.0 | 153.0 | 55.0 | 100.0 |
| 02 | 213.0 | 70.0 | 153.0 | 64.0 |
| 03 | 247.0 | 1.0 | 246.0 | 6.0 |
| 04 | 2.0 | 1.0 | 497.0 | 0.0 |
| 05 | 305.0 | 22.0 | 98.0 | 75.0 |
| 06 | 494.0 | 4.0 | 2.0 | 0.0 |
| 07 | 1.0 | 497.0 | 2.0 | 0.0 |
| 08 | 491.0 | 0.0 | 1.0 | 8.0 |
| 09 | 61.0 | 94.0 | 267.0 | 78.0 |
| 10 | 244.0 | 41.0 | 89.0 | 126.0 |
| 11 | 172.0 | 122.0 | 156.0 | 50.0 |
| 12 | 143.0 | 105.0 | 27.0 | 225.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.425 | 0.2 | -0.805 | -0.22 |
| 02 | 0.528 | -0.57 | 0.2 | -0.658 |
| 03 | 0.675 | -3.903 | 0.671 | -2.819 |
| 04 | -3.573 | -3.903 | 1.371 | -4.4 |
| 05 | 0.885 | -1.681 | -0.24 | -0.503 |
| 06 | 1.365 | -3.126 | -3.573 | -4.4 |
| 07 | -3.903 | 1.371 | -3.573 | -4.4 |
| 08 | 1.359 | -4.4 | -3.903 | -2.584 |
| 09 | -0.705 | -0.281 | 0.752 | -0.464 |
| 10 | 0.663 | -1.09 | -0.335 | 0.008 |
| 11 | 0.316 | -0.024 | 0.219 | -0.898 |
| 12 | 0.133 | -0.172 | -1.489 | 0.582 |