GCR_MOUSE.H11MO.1.A motif - HOmo sapiens COmprehensive MOdel COllection

Check the newest release v12

Model info

Transcription factor

Model

GCR_MOUSE.H11MO.1.A

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

12

Quality

A

Motif rank

1

Consensus

hvRGRACAbdvh

Best auROC (human)

0.93

Best auROC (mouse)

0.925

Peak sets in benchmark (human)

143

Peak sets in benchmark (mouse)

119

Aligned words

500

TF family

Steroid hormone receptors (NR3) {2.1.1}

TF subfamily

GR-like receptors (NR3C) {2.1.1.1}

MGI

EntrezGene

UniProt ID

UniProt AC

P06537
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.63093
0.0005	6.62912
0.0001	8.07911

GTEx tissue expression atlas

Nr3c1 expression

Motifs in JASPAR

MA0113.1 (NR3C1; Mus musculus/Rattus norvegicus/Oncorhynchus mykiss/Gallus gallus/Homo sapiens)

MA0113.2 (NR3C1; Mus musculus)

MA0113.3 (NR3C1; Homo sapiens)

PCM

	A	C	G	T
01	192.0	153.0	55.0	100.0
02	213.0	70.0	153.0	64.0
03	247.0	1.0	246.0	6.0
04	2.0	1.0	497.0	0.0
05	305.0	22.0	98.0	75.0
06	494.0	4.0	2.0	0.0
07	1.0	497.0	2.0	0.0
08	491.0	0.0	1.0	8.0
09	61.0	94.0	267.0	78.0
10	244.0	41.0	89.0	126.0
11	172.0	122.0	156.0	50.0
12	143.0	105.0	27.0	225.0

PWM

	A	C	G	T
01	0.425	0.2	-0.805	-0.22
02	0.528	-0.57	0.2	-0.658
03	0.675	-3.903	0.671	-2.819
04	-3.573	-3.903	1.371	-4.4
05	0.885	-1.681	-0.24	-0.503
06	1.365	-3.126	-3.573	-4.4
07	-3.903	1.371	-3.573	-4.4
08	1.359	-4.4	-3.903	-2.584
09	-0.705	-0.281	0.752	-0.464
10	0.663	-1.09	-0.335	0.008
11	0.316	-0.024	0.219	-0.898
12	0.133	-0.172	-1.489	0.582