Check the newest release v12
Model info
Transcription factorGFI1B
(GeneCards)
ModelGFI1B_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusnKYWbWGRTTTnhn
Best auROC (human)0.887
Best auROC (mouse)0.891
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)24
Aligned words537
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGFI1 factors {2.3.3.21}
HGNCHGNC:4238
EntrezGeneGeneID:8328
(SSTAR profile)
UniProt IDGFI1B_HUMAN
UniProt ACQ5VTD9
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.173210000000001
0.0005 12.86316
0.0001 16.19912
GTEx tissue expression atlas GFI1B expression
ReMap ChIP-seq dataset list GFI1B datasets
Motifs in JASPAR
MA0483.1 (Gfi1b; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
017.010.075.04.018.019.041.014.016.020.080.034.07.013.0109.033.0
027.031.00.010.05.041.01.015.023.0214.012.056.01.062.08.014.0
0315.02.02.017.0104.035.06.0203.03.06.01.011.011.020.04.060.0
045.070.050.08.01.040.010.012.00.05.06.02.04.066.0127.094.0
053.00.02.05.047.00.07.0127.060.02.07.0124.06.00.03.0107.0
066.014.092.04.00.01.01.00.01.00.014.04.04.018.0334.07.0
074.00.06.01.016.04.011.02.0332.036.068.05.011.02.02.00.0
083.06.04.0350.00.00.04.038.04.00.01.082.00.01.00.07.0
090.00.00.07.00.00.01.06.00.03.01.05.02.01.02.0472.0
100.00.00.02.00.00.02.02.00.00.00.04.06.017.053.0414.0
112.01.03.00.09.06.00.02.09.026.015.05.069.0164.088.0101.0
1220.027.016.026.037.073.021.066.010.031.015.050.012.027.024.045.0
139.023.032.015.048.041.07.062.013.010.028.025.031.031.040.085.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.454-1.1140.868-1.975-0.543-0.490.269-0.788-0.658-0.4390.9320.083-1.454-0.861.2410.054
02-1.454-0.008-4.4-1.114-1.770.269-3.126-0.721-0.3021.913-0.9380.578-3.1260.679-1.328-0.788
03-0.721-2.584-2.584-0.5991.1940.112-1.61.861-2.234-1.6-3.126-1.022-1.022-0.439-1.9750.646
04-1.770.80.465-1.328-3.1260.244-1.114-0.938-4.4-1.77-1.6-2.584-1.9750.7411.3931.093
05-2.234-4.4-2.584-1.770.404-4.4-1.4541.3930.646-2.584-1.4541.369-1.6-4.4-2.2341.222
06-1.6-0.7881.072-1.975-4.4-3.126-3.126-4.4-3.126-4.4-0.788-1.975-1.975-0.5432.358-1.454
07-1.975-4.4-1.6-3.126-0.658-1.975-1.022-2.5842.3520.140.771-1.77-1.022-2.584-2.584-4.4
08-2.234-1.6-1.9752.405-4.4-4.4-1.9750.193-1.975-4.4-3.1260.957-4.4-3.126-4.4-1.454
09-4.4-4.4-4.4-1.454-4.4-4.4-3.126-1.6-4.4-2.234-3.126-1.77-2.584-3.126-2.5842.703
10-4.4-4.4-4.4-2.584-4.4-4.4-2.584-2.584-4.4-4.4-4.4-1.975-1.6-0.5990.5232.572
11-2.584-3.126-2.234-4.4-1.215-1.6-4.4-2.584-1.215-0.181-0.721-1.770.7851.6481.0271.165
12-0.439-0.144-0.658-0.1810.1670.841-0.3920.741-1.114-0.008-0.7210.465-0.938-0.144-0.260.361
13-1.215-0.3020.023-0.7210.4250.269-1.4540.679-0.86-1.114-0.108-0.22-0.008-0.0080.2440.993