We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGFI1B
(GeneCards)
ModelGFI1B_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusnKYWbWGRTTTnhn
Best auROC (human)0.887
Best auROC (mouse)0.891
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)24
Aligned words537
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGFI1 factors {2.3.3.21}
HGNCHGNC:4238
EntrezGeneGeneID:8328
(SSTAR profile)
UniProt IDGFI1B_HUMAN
UniProt ACQ5VTD9
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.173210000000001
0.0005 12.86316
0.0001 16.19912
GTEx tissue expression atlas GFI1B expression
ReMap ChIP-seq dataset list GFI1B datasets
Motifs in JASPAR
MA0483.1 (Gfi1b; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
017.010.075.04.018.019.041.014.016.020.080.034.07.013.0109.033.0
027.031.00.010.05.041.01.015.023.0214.012.056.01.062.08.014.0
0315.02.02.017.0104.035.06.0203.03.06.01.011.011.020.04.060.0
045.070.050.08.01.040.010.012.00.05.06.02.04.066.0127.094.0
053.00.02.05.047.00.07.0127.060.02.07.0124.06.00.03.0107.0
066.014.092.04.00.01.01.00.01.00.014.04.04.018.0334.07.0
074.00.06.01.016.04.011.02.0332.036.068.05.011.02.02.00.0
083.06.04.0350.00.00.04.038.04.00.01.082.00.01.00.07.0
090.00.00.07.00.00.01.06.00.03.01.05.02.01.02.0472.0
100.00.00.02.00.00.02.02.00.00.00.04.06.017.053.0414.0
112.01.03.00.09.06.00.02.09.026.015.05.069.0164.088.0101.0
1220.027.016.026.037.073.021.066.010.031.015.050.012.027.024.045.0
139.023.032.015.048.041.07.062.013.010.028.025.031.031.040.085.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.454-1.1140.868-1.975-0.543-0.490.269-0.788-0.658-0.4390.9320.083-1.454-0.861.2410.054
02-1.454-0.008-4.4-1.114-1.770.269-3.126-0.721-0.3021.913-0.9380.578-3.1260.679-1.328-0.788
03-0.721-2.584-2.584-0.5991.1940.112-1.61.861-2.234-1.6-3.126-1.022-1.022-0.439-1.9750.646
04-1.770.80.465-1.328-3.1260.244-1.114-0.938-4.4-1.77-1.6-2.584-1.9750.7411.3931.093
05-2.234-4.4-2.584-1.770.404-4.4-1.4541.3930.646-2.584-1.4541.369-1.6-4.4-2.2341.222
06-1.6-0.7881.072-1.975-4.4-3.126-3.126-4.4-3.126-4.4-0.788-1.975-1.975-0.5432.358-1.454
07-1.975-4.4-1.6-3.126-0.658-1.975-1.022-2.5842.3520.140.771-1.77-1.022-2.584-2.584-4.4
08-2.234-1.6-1.9752.405-4.4-4.4-1.9750.193-1.975-4.4-3.1260.957-4.4-3.126-4.4-1.454
09-4.4-4.4-4.4-1.454-4.4-4.4-3.126-1.6-4.4-2.234-3.126-1.77-2.584-3.126-2.5842.703
10-4.4-4.4-4.4-2.584-4.4-4.4-2.584-2.584-4.4-4.4-4.4-1.975-1.6-0.5990.5232.572
11-2.584-3.126-2.234-4.4-1.215-1.6-4.4-2.584-1.215-0.181-0.721-1.770.7851.6481.0271.165
12-0.439-0.144-0.658-0.1810.1670.841-0.3920.741-1.114-0.008-0.7210.465-0.938-0.144-0.260.361
13-1.215-0.3020.023-0.7210.4250.269-1.4540.679-0.86-1.114-0.108-0.22-0.008-0.0080.2440.993