Model info
| Transcription factor | GFI1B (GeneCards) | ||||||||
| Model | GFI1B_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RYWSWGATTK | ||||||||
| Best auROC (human) | 0.891 | ||||||||
| Best auROC (mouse) | 0.887 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 24 | ||||||||
| Aligned words | 503 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GFI1 factors {2.3.3.21} | ||||||||
| HGNC | HGNC:4238 | ||||||||
| EntrezGene | GeneID:8328 (SSTAR profile) | ||||||||
| UniProt ID | GFI1B_HUMAN | ||||||||
| UniProt AC | Q5VTD9 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GFI1B expression | ||||||||
| ReMap ChIP-seq dataset list | GFI1B datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 78.0 | 26.0 | 324.0 | 72.0 |
| 02 | 29.0 | 374.0 | 39.0 | 58.0 |
| 03 | 150.0 | 92.0 | 9.0 | 249.0 |
| 04 | 8.0 | 182.0 | 259.0 | 51.0 |
| 05 | 200.0 | 18.0 | 13.0 | 269.0 |
| 06 | 3.0 | 3.0 | 492.0 | 2.0 |
| 07 | 417.0 | 28.0 | 51.0 | 4.0 |
| 08 | 0.0 | 5.0 | 8.0 | 487.0 |
| 09 | 2.0 | 0.0 | 0.0 | 498.0 |
| 10 | 18.0 | 61.0 | 99.0 | 322.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.464 | -1.525 | 0.945 | -0.543 |
| 02 | -1.421 | 1.088 | -1.138 | -0.754 |
| 03 | 0.18 | -0.302 | -2.484 | 0.683 |
| 04 | -2.584 | 0.372 | 0.722 | -0.879 |
| 05 | 0.465 | -1.868 | -2.163 | 0.76 |
| 06 | -3.325 | -3.325 | 1.361 | -3.573 |
| 07 | 1.196 | -1.454 | -0.879 | -3.126 |
| 08 | -4.4 | -2.961 | -2.584 | 1.351 |
| 09 | -3.573 | -4.4 | -4.4 | 1.373 |
| 10 | -1.868 | -0.705 | -0.23 | 0.939 |