We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGfi1b
ModelGFI1B_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusdKCWSWGATTKn
Best auROC (human)0.881
Best auROC (mouse)0.899
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)24
Aligned words524
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGFI1 factors {2.3.3.21}
MGIMGI:1276578
EntrezGeneGeneID:14582
(SSTAR profile)
UniProt IDGFI1B_MOUSE
UniProt ACO70237
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.363945000000001
0.0005 12.40492
0.0001 16.21715
GTEx tissue expression atlas Gfi1b expression
Motifs in JASPAR
MA0483.1 (Gfi1b; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0125.00.094.06.025.05.019.011.012.011.089.016.016.010.0115.046.0
029.058.09.02.00.023.03.00.027.0254.012.024.03.071.03.02.0
0322.02.01.014.0149.042.03.0212.09.03.00.015.05.04.01.018.0
042.081.0100.02.01.025.025.00.00.05.00.00.00.032.0188.039.0
050.00.00.03.056.02.01.084.0125.08.09.0171.01.01.00.039.0
060.04.0175.03.00.00.010.01.00.02.08.00.00.01.0292.04.0
070.00.00.00.04.00.03.00.0384.02.099.00.04.01.03.00.0
080.00.05.0387.00.00.01.02.01.01.02.0101.00.00.00.00.0
090.00.00.01.00.00.00.01.00.00.00.08.09.02.05.0474.0
105.01.02.01.01.00.01.00.01.03.01.00.032.043.061.0348.0
1116.013.05.05.017.09.010.011.014.023.017.011.058.0104.097.090.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.22-4.41.093-1.6-0.22-1.77-0.49-1.022-0.938-1.0221.039-0.658-0.658-1.1141.2940.383
02-1.2150.613-1.215-2.584-4.4-0.302-2.234-4.4-0.1442.084-0.938-0.26-2.2340.814-2.234-2.584
03-0.346-2.584-3.126-0.7881.5520.293-2.2341.904-1.215-2.234-4.4-0.721-1.77-1.975-3.126-0.543
04-2.5840.9451.155-2.584-3.126-0.22-0.22-4.4-4.4-1.77-4.4-4.4-4.40.0231.7840.219
05-4.4-4.4-4.4-2.2340.578-2.584-3.1260.9811.377-1.328-1.2151.69-3.126-3.126-4.40.219
06-4.4-1.9751.713-2.234-4.4-4.4-1.114-3.126-4.4-2.584-1.328-4.4-4.4-3.1262.224-1.975
07-4.4-4.4-4.4-4.4-1.975-4.4-2.234-4.42.497-2.5841.145-4.4-1.975-3.126-2.234-4.4
08-4.4-4.4-1.772.505-4.4-4.4-3.126-2.584-3.126-3.126-2.5841.165-4.4-4.4-4.4-4.4
09-4.4-4.4-4.4-3.126-4.4-4.4-4.4-3.126-4.4-4.4-4.4-1.328-1.215-2.584-1.772.708
10-1.77-3.126-2.584-3.126-3.126-4.4-3.126-4.4-3.126-2.234-3.126-4.40.0230.3160.6632.399
11-0.658-0.86-1.77-1.77-0.599-1.215-1.114-1.022-0.788-0.302-0.599-1.0220.6131.1941.1241.05