Model info
| Transcription factor | Gfi1b | ||||||||
| Model | GFI1B_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dYWSTGRTTK | ||||||||
| Best auROC (human) | 0.862 | ||||||||
| Best auROC (mouse) | 0.888 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 24 | ||||||||
| Aligned words | 503 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GFI1 factors {2.3.3.21} | ||||||||
| MGI | MGI:1276578 | ||||||||
| EntrezGene | GeneID:14582 (SSTAR profile) | ||||||||
| UniProt ID | GFI1B_MOUSE | ||||||||
| UniProt AC | O70237 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Gfi1b expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 99.0 | 15.0 | 256.0 | 130.0 |
| 02 | 37.0 | 379.0 | 26.0 | 58.0 |
| 03 | 163.0 | 25.0 | 3.0 | 309.0 |
| 04 | 3.0 | 98.0 | 365.0 | 34.0 |
| 05 | 121.0 | 3.0 | 5.0 | 371.0 |
| 06 | 4.0 | 2.0 | 490.0 | 4.0 |
| 07 | 319.0 | 15.0 | 163.0 | 3.0 |
| 08 | 3.0 | 14.0 | 13.0 | 470.0 |
| 09 | 9.0 | 3.0 | 52.0 | 436.0 |
| 10 | 23.0 | 47.0 | 95.0 | 335.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.23 | -2.034 | 0.711 | 0.039 |
| 02 | -1.189 | 1.101 | -1.525 | -0.754 |
| 03 | 0.263 | -1.561 | -3.325 | 0.898 |
| 04 | -3.325 | -0.24 | 1.063 | -1.27 |
| 05 | -0.032 | -3.325 | -2.961 | 1.08 |
| 06 | -3.126 | -3.573 | 1.357 | -3.126 |
| 07 | 0.929 | -2.034 | 0.263 | -3.325 |
| 08 | -3.325 | -2.096 | -2.163 | 1.315 |
| 09 | -2.484 | -3.325 | -0.86 | 1.241 |
| 10 | -1.64 | -0.958 | -0.271 | 0.978 |