Transcription factor | GFI1 (GeneCards) | ||||||||
Model | GFI1_HUMAN.H11MO.0.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 10 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | RShSWGATTb | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 152 | ||||||||
TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
TF subfamily | GFI1 factors {2.3.3.21} | ||||||||
HGNC | HGNC:4237 | ||||||||
EntrezGene | GeneID:2672 (SSTAR profile) | ||||||||
UniProt ID | GFI1_HUMAN | ||||||||
UniProt AC | Q99684 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | GFI1 expression | ||||||||
ReMap ChIP-seq dataset list | GFI1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 43.585 | 10.395 | 87.865 | 7.692 |
02 | 11.626 | 102.366 | 20.833 | 14.711 |
03 | 60.59 | 15.011 | 11.312 | 62.624 |
04 | 7.778 | 42.695 | 84.209 | 14.855 |
05 | 35.771 | 2.539 | 11.958 | 99.269 |
06 | 0.0 | 0.0 | 149.537 | 0.0 |
07 | 149.537 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 149.537 |
09 | 0.0 | 0.0 | 0.0 | 149.537 |
10 | 15.477 | 17.655 | 28.535 | 87.869 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.149 | -1.199 | 0.836 | -1.463 |
02 | -1.099 | 0.987 | -0.559 | -0.884 |
03 | 0.47 | -0.865 | -1.123 | 0.503 |
04 | -1.454 | 0.129 | 0.794 | -0.875 |
05 | -0.043 | -2.322 | -1.073 | 0.956 |
06 | -3.43 | -3.43 | 1.362 | -3.43 |
07 | 1.362 | -3.43 | -3.43 | -3.43 |
08 | -3.43 | -3.43 | -3.43 | 1.362 |
09 | -3.43 | -3.43 | -3.43 | 1.362 |
10 | -0.837 | -0.715 | -0.26 | 0.836 |