Model info
| Transcription factor | Gfi1 | ||||||||
| Model | GFI1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RShSWGATTb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 152 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GFI1 factors {2.3.3.21} | ||||||||
| MGI | MGI:103170 | ||||||||
| EntrezGene | GeneID:14581 (SSTAR profile) | ||||||||
| UniProt ID | GFI1_MOUSE | ||||||||
| UniProt AC | P70338 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Gfi1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 43.585 | 10.395 | 87.865 | 7.692 |
| 02 | 11.626 | 102.366 | 20.833 | 14.711 |
| 03 | 60.59 | 15.011 | 11.312 | 62.624 |
| 04 | 7.778 | 42.695 | 84.209 | 14.855 |
| 05 | 35.771 | 2.539 | 11.958 | 99.269 |
| 06 | 0.0 | 0.0 | 149.537 | 0.0 |
| 07 | 149.537 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 149.537 |
| 09 | 0.0 | 0.0 | 0.0 | 149.537 |
| 10 | 15.477 | 17.655 | 28.535 | 87.869 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.149 | -1.199 | 0.836 | -1.463 |
| 02 | -1.099 | 0.987 | -0.559 | -0.884 |
| 03 | 0.47 | -0.865 | -1.123 | 0.503 |
| 04 | -1.454 | 0.129 | 0.794 | -0.875 |
| 05 | -0.043 | -2.322 | -1.073 | 0.956 |
| 06 | -3.43 | -3.43 | 1.362 | -3.43 |
| 07 | 1.362 | -3.43 | -3.43 | -3.43 |
| 08 | -3.43 | -3.43 | -3.43 | 1.362 |
| 09 | -3.43 | -3.43 | -3.43 | 1.362 |
| 10 | -0.837 | -0.715 | -0.26 | 0.836 |