We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGLI1
(GeneCards)
ModelGLI1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
D
Motif rank
0
ConsensusbSTGGGTGGYCh
Best auROC (human)0.561
Best auROC (mouse)0.974
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)3
Aligned words500
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGLI-like factors {2.3.3.1}
HGNCHGNC:4317
EntrezGeneGeneID:2735
(SSTAR profile)
UniProt IDGLI1_HUMAN
UniProt ACP08151
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.63706
0.0005 4.6736699999999995
0.0001 6.89959
GTEx tissue expression atlas GLI1 expression
ReMap ChIP-seq dataset list GLI1 datasets
Motifs in JASPAR
PCM
ACGT
0156.0196.092.0156.0
0217.0236.0200.047.0
0335.038.06.0421.0
0410.014.0453.023.0
055.06.0382.0107.0
066.020.0474.00.0
0733.011.010.0446.0
086.04.0487.03.0
098.02.0469.021.0
107.0119.076.0298.0
1121.0440.021.018.0
1258.0180.030.0232.0
PWM
ACGT
01-0.7880.445-0.3020.219
02-1.920.630.465-0.958
03-1.242-1.163-2.8191.206
04-2.394-2.0961.279-1.64
05-2.961-2.8191.109-0.153
06-2.819-1.771.324-4.4
07-1.298-2.311-2.3941.263
08-2.819-3.1261.351-3.325
09-2.584-3.5731.313-1.725
10-2.694-0.049-0.490.862
11-1.7251.25-1.725-1.868
12-0.7540.361-1.3890.613