Model info
| Transcription factor | GLI1 (GeneCards) | ||||||||
| Model | GLI1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bSTGGGTGGYCh | ||||||||
| Best auROC (human) | 0.561 | ||||||||
| Best auROC (mouse) | 0.974 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
| HGNC | HGNC:4317 | ||||||||
| EntrezGene | GeneID:2735 (SSTAR profile) | ||||||||
| UniProt ID | GLI1_HUMAN | ||||||||
| UniProt AC | P08151 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GLI1 expression | ||||||||
| ReMap ChIP-seq dataset list | GLI1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 56.0 | 196.0 | 92.0 | 156.0 |
| 02 | 17.0 | 236.0 | 200.0 | 47.0 |
| 03 | 35.0 | 38.0 | 6.0 | 421.0 |
| 04 | 10.0 | 14.0 | 453.0 | 23.0 |
| 05 | 5.0 | 6.0 | 382.0 | 107.0 |
| 06 | 6.0 | 20.0 | 474.0 | 0.0 |
| 07 | 33.0 | 11.0 | 10.0 | 446.0 |
| 08 | 6.0 | 4.0 | 487.0 | 3.0 |
| 09 | 8.0 | 2.0 | 469.0 | 21.0 |
| 10 | 7.0 | 119.0 | 76.0 | 298.0 |
| 11 | 21.0 | 440.0 | 21.0 | 18.0 |
| 12 | 58.0 | 180.0 | 30.0 | 232.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.788 | 0.445 | -0.302 | 0.219 |
| 02 | -1.92 | 0.63 | 0.465 | -0.958 |
| 03 | -1.242 | -1.163 | -2.819 | 1.206 |
| 04 | -2.394 | -2.096 | 1.279 | -1.64 |
| 05 | -2.961 | -2.819 | 1.109 | -0.153 |
| 06 | -2.819 | -1.77 | 1.324 | -4.4 |
| 07 | -1.298 | -2.311 | -2.394 | 1.263 |
| 08 | -2.819 | -3.126 | 1.351 | -3.325 |
| 09 | -2.584 | -3.573 | 1.313 | -1.725 |
| 10 | -2.694 | -0.049 | -0.49 | 0.862 |
| 11 | -1.725 | 1.25 | -1.725 | -1.868 |
| 12 | -0.754 | 0.361 | -1.389 | 0.613 |