Transcription factor | Gli1 | ||||||||
Model | GLI1_MOUSE.H11MO.0.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 12 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | bSTGGGTGGYCh | ||||||||
Best auROC (human) | 0.561 | ||||||||
Best auROC (mouse) | 0.974 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 500 | ||||||||
TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
MGI | MGI:95727 | ||||||||
EntrezGene | GeneID:14632 (SSTAR profile) | ||||||||
UniProt ID | GLI1_MOUSE | ||||||||
UniProt AC | P47806 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Gli1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 56.0 | 196.0 | 92.0 | 156.0 |
02 | 17.0 | 236.0 | 200.0 | 47.0 |
03 | 35.0 | 38.0 | 6.0 | 421.0 |
04 | 10.0 | 14.0 | 453.0 | 23.0 |
05 | 5.0 | 6.0 | 382.0 | 107.0 |
06 | 6.0 | 20.0 | 474.0 | 0.0 |
07 | 33.0 | 11.0 | 10.0 | 446.0 |
08 | 6.0 | 4.0 | 487.0 | 3.0 |
09 | 8.0 | 2.0 | 469.0 | 21.0 |
10 | 7.0 | 119.0 | 76.0 | 298.0 |
11 | 21.0 | 440.0 | 21.0 | 18.0 |
12 | 58.0 | 180.0 | 30.0 | 232.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.788 | 0.445 | -0.302 | 0.219 |
02 | -1.92 | 0.63 | 0.465 | -0.958 |
03 | -1.242 | -1.163 | -2.819 | 1.206 |
04 | -2.394 | -2.096 | 1.279 | -1.64 |
05 | -2.961 | -2.819 | 1.109 | -0.153 |
06 | -2.819 | -1.77 | 1.324 | -4.4 |
07 | -1.298 | -2.311 | -2.394 | 1.263 |
08 | -2.819 | -3.126 | 1.351 | -3.325 |
09 | -2.584 | -3.573 | 1.313 | -1.725 |
10 | -2.694 | -0.049 | -0.49 | 0.862 |
11 | -1.725 | 1.25 | -1.725 | -1.868 |
12 | -0.754 | 0.361 | -1.389 | 0.613 |