Model info
| Transcription factor | GLI2 (GeneCards) | ||||||||
| Model | GLI2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | STGGGTGGTCb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 970 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
| HGNC | HGNC:4318 | ||||||||
| EntrezGene | GeneID:2736 (SSTAR profile) | ||||||||
| UniProt ID | GLI2_HUMAN | ||||||||
| UniProt AC | P10070 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GLI2 expression | ||||||||
| ReMap ChIP-seq dataset list | GLI2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 105.231 | 162.836 | 574.351 | 88.095 |
| 02 | 0.0 | 0.0 | 0.0 | 930.513 |
| 03 | 0.0 | 0.0 | 930.513 | 0.0 |
| 04 | 0.0 | 0.0 | 786.124 | 144.389 |
| 05 | 0.0 | 0.0 | 930.513 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 930.513 |
| 07 | 0.0 | 0.0 | 930.513 | 0.0 |
| 08 | 0.0 | 0.0 | 930.513 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 930.513 |
| 10 | 0.0 | 930.513 | 0.0 | 0.0 |
| 11 | 74.325 | 343.714 | 86.807 | 425.667 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.784 | -0.354 | 0.899 | -0.959 |
| 02 | -4.921 | -4.921 | -4.921 | 1.381 |
| 03 | -4.921 | -4.921 | 1.381 | -4.921 |
| 04 | -4.921 | -4.921 | 1.213 | -0.472 |
| 05 | -4.921 | -4.921 | 1.381 | -4.921 |
| 06 | -4.921 | -4.921 | -4.921 | 1.381 |
| 07 | -4.921 | -4.921 | 1.381 | -4.921 |
| 08 | -4.921 | -4.921 | 1.381 | -4.921 |
| 09 | -4.921 | -4.921 | -4.921 | 1.381 |
| 10 | -4.921 | 1.381 | -4.921 | -4.921 |
| 11 | -1.126 | 0.388 | -0.974 | 0.601 |