We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGLI3
(GeneCards)
ModelGLI3_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length11
Quality
B
Motif rank
0
ConsensusnTGGGTGGTYb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words15
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGLI-like factors {2.3.3.1}
HGNCHGNC:4319
EntrezGeneGeneID:2737
(SSTAR profile)
UniProt IDGLI3_HUMAN
UniProt ACP10071
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.676895
0.0005 5.588445
0.0001 7.035285
GTEx tissue expression atlas GLI3 expression
ReMap ChIP-seq dataset list GLI3 datasets
Motifs in JASPAR
PCM
ACGT
011.544.5674.4634.567
020.01.0440.014.093
030.00.014.0931.044
040.01.04413.0491.044
050.00.015.1370.0
060.00.00.015.137
070.00.015.1370.0
080.00.013.0492.088
091.0440.01.04413.049
101.0449.9181.0443.132
111.545.6112.5845.402
PWM
ACGT
01-0.6990.1620.1420.162
02-1.883-0.952-1.8831.197
03-1.883-1.8831.197-0.952
04-1.883-0.9521.124-0.952
05-1.883-1.8831.265-1.883
06-1.883-1.883-1.8831.265
07-1.883-1.8831.265-1.883
08-1.883-1.8831.124-0.478
09-0.952-1.883-0.9521.124
10-0.9520.865-0.952-0.158
11-0.6990.343-0.3130.309