Model info
| Transcription factor | Gli3 | ||||||||
| Model | GLI3_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbWGKGTGGbYb | ||||||||
| Best auROC (human) | 0.52 | ||||||||
| Best auROC (mouse) | 0.752 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 476 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
| MGI | MGI:95729 | ||||||||
| EntrezGene | GeneID:14634 (SSTAR profile) | ||||||||
| UniProt ID | GLI3_MOUSE | ||||||||
| UniProt AC | Q61602 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Gli3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 53.0 | 190.0 | 96.0 | 137.0 |
| 02 | 24.0 | 251.0 | 144.0 | 57.0 |
| 03 | 50.0 | 43.0 | 14.0 | 369.0 |
| 04 | 4.0 | 21.0 | 411.0 | 40.0 |
| 05 | 17.0 | 1.0 | 332.0 | 126.0 |
| 06 | 2.0 | 25.0 | 448.0 | 1.0 |
| 07 | 84.0 | 14.0 | 6.0 | 372.0 |
| 08 | 7.0 | 1.0 | 457.0 | 11.0 |
| 09 | 7.0 | 25.0 | 425.0 | 19.0 |
| 10 | 20.0 | 165.0 | 60.0 | 231.0 |
| 11 | 39.0 | 347.0 | 42.0 | 48.0 |
| 12 | 64.0 | 147.0 | 86.0 | 179.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.793 | 0.463 | -0.212 | 0.139 |
| 02 | -1.552 | 0.74 | 0.188 | -0.722 |
| 03 | -0.85 | -0.996 | -2.048 | 1.123 |
| 04 | -3.08 | -1.677 | 1.23 | -1.065 |
| 05 | -1.872 | -3.859 | 1.018 | 0.056 |
| 06 | -3.527 | -1.513 | 1.316 | -3.859 |
| 07 | -0.343 | -2.048 | -2.772 | 1.131 |
| 08 | -2.647 | -3.859 | 1.336 | -2.263 |
| 09 | -2.647 | -1.513 | 1.264 | -1.77 |
| 10 | -1.722 | 0.323 | -0.672 | 0.657 |
| 11 | -1.09 | 1.062 | -1.018 | -0.889 |
| 12 | -0.609 | 0.209 | -0.32 | 0.404 |