We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGLIS1
(GeneCards)
ModelGLIS1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length13
Quality
D
Motif rank
0
ConsensushYGYGGGGGGTMd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words492
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGLI-like factors {2.3.3.1}
HGNCHGNC:29525
EntrezGeneGeneID:148979
(SSTAR profile)
UniProt IDGLIS1_HUMAN
UniProt ACQ8NBF1
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.8881099999999997
0.0005 3.95091
0.0001 6.124874999999999
GTEx tissue expression atlas GLIS1 expression
ReMap ChIP-seq dataset list GLIS1 datasets
Motifs in JASPAR
PCM
ACGT
0191.590.558.5251.5
0253.25310.2546.2582.25
0329.520.5418.523.5
0421.7593.7520.75355.75
0515.2513.25446.2517.25
0615.2515.25449.2512.25
076.256.25455.2524.25
0818.259.25448.2516.25
097.09.0467.09.0
108.758.75464.759.75
1110.07.021.0454.0
12148.75275.7542.7524.75
13103.2553.25154.25181.25
PWM
ACGT
01-0.292-0.302-0.730.709
02-0.8210.918-0.958-0.396
03-1.389-1.7311.216-1.604
04-1.676-0.268-1.721.054
05-2.003-2.131.28-1.891
06-2.003-2.0031.286-2.2
07-2.771-2.7711.3-1.574
08-1.839-2.4451.284-1.946
09-2.679-2.4691.325-2.469
10-2.493-2.4931.32-2.4
11-2.378-2.679-1.7091.297
120.1880.8-1.034-1.555
13-0.173-0.8210.2240.384