Model info
| Transcription factor | GLIS2 (GeneCards) | ||||||||
| Model | GLIS2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | SdhYGYGGGGGGTv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 1681 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
| HGNC | HGNC:29450 | ||||||||
| EntrezGene | GeneID:84662 (SSTAR profile) | ||||||||
| UniProt ID | GLIS2_HUMAN | ||||||||
| UniProt AC | Q9BZE0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GLIS2 expression | ||||||||
| ReMap ChIP-seq dataset list | GLIS2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 131.75 | 1253.75 | 201.75 | 93.75 |
| 02 | 324.5 | 198.5 | 431.5 | 726.5 |
| 03 | 343.75 | 394.75 | 85.75 | 856.75 |
| 04 | 60.25 | 1057.25 | 58.25 | 505.25 |
| 05 | 68.0 | 18.0 | 1587.0 | 8.0 |
| 06 | 41.5 | 1178.5 | 14.5 | 446.5 |
| 07 | 118.25 | 2.25 | 1504.25 | 56.25 |
| 08 | 1.0 | 0.0 | 1637.0 | 43.0 |
| 09 | 1.0 | 0.0 | 1677.0 | 3.0 |
| 10 | 2.0 | 1.0 | 1673.0 | 5.0 |
| 11 | 2.5 | 0.5 | 1677.5 | 0.5 |
| 12 | 10.25 | 2.25 | 1660.25 | 8.25 |
| 13 | 13.5 | 209.5 | 89.5 | 1368.5 |
| 14 | 486.75 | 874.75 | 192.75 | 126.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.15 | 1.09 | -0.729 | -1.485 |
| 02 | -0.257 | -0.745 | 0.026 | 0.546 |
| 03 | -0.2 | -0.062 | -1.572 | 0.71 |
| 04 | -1.916 | 0.92 | -1.949 | 0.183 |
| 05 | -1.799 | -3.057 | 1.326 | -3.757 |
| 06 | -2.276 | 1.028 | -3.251 | 0.06 |
| 07 | -1.257 | -4.633 | 1.272 | -1.983 |
| 08 | -4.996 | -5.426 | 1.356 | -2.242 |
| 09 | -4.996 | -5.426 | 1.381 | -4.465 |
| 10 | -4.695 | -4.996 | 1.378 | -4.12 |
| 11 | -4.574 | -5.188 | 1.381 | -5.188 |
| 12 | -3.551 | -4.633 | 1.371 | -3.732 |
| 13 | -3.314 | -0.692 | -1.53 | 1.178 |
| 14 | 0.146 | 0.731 | -0.774 | -1.188 |