We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGLIS2
(GeneCards)
ModelGLIS2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length14
Quality
D
Motif rank
0
ConsensusSdhYGYGGGGGGTv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1681
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGLI-like factors {2.3.3.1}
HGNCHGNC:29450
EntrezGeneGeneID:84662
(SSTAR profile)
UniProt IDGLIS2_HUMAN
UniProt ACQ9BZE0
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 -0.09224
0.0005 1.4016600000000001
0.0001 4.4592600000000004
GTEx tissue expression atlas GLIS2 expression
ReMap ChIP-seq dataset list GLIS2 datasets
Motifs in JASPAR
PCM
ACGT
01131.751253.75201.7593.75
02324.5198.5431.5726.5
03343.75394.7585.75856.75
0460.251057.2558.25505.25
0568.018.01587.08.0
0641.51178.514.5446.5
07118.252.251504.2556.25
081.00.01637.043.0
091.00.01677.03.0
102.01.01673.05.0
112.50.51677.50.5
1210.252.251660.258.25
1313.5209.589.51368.5
14486.75874.75192.75126.75
PWM
ACGT
01-1.151.09-0.729-1.485
02-0.257-0.7450.0260.546
03-0.2-0.062-1.5720.71
04-1.9160.92-1.9490.183
05-1.799-3.0571.326-3.757
06-2.2761.028-3.2510.06
07-1.257-4.6331.272-1.983
08-4.996-5.4261.356-2.242
09-4.996-5.4261.381-4.465
10-4.695-4.9961.378-4.12
11-4.574-5.1881.381-5.188
12-3.551-4.6331.371-3.732
13-3.314-0.692-1.531.178
140.1460.731-0.774-1.188