GLIS3_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

GLIS3
(GeneCards)

Model

GLIS3_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

10

Quality

D

Motif rank

0

Consensus

SYGGGGGGTM

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

38

TF family

More than 3 adjacent zinc finger factors {2.3.3}

TF subfamily

GLI-like factors {2.3.3.1}

HGNC

EntrezGene

GeneID:169792
(SSTAR profile)

UniProt ID

UniProt AC

Q8NEA6
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.32683
0.0005	5.17638
0.0001	6.689135

GTEx tissue expression atlas

GLIS3 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0737.1 (GLIS3; Homo sapiens)

PCM

	A	C	G	T
01	2.05	7.479	27.978	0.499
02	0.997	14.515	3.546	18.947
03	3.546	0.0	32.465	1.994
04	0.0	0.0	30.471	7.535
05	0.997	0.997	36.011	0.0
06	1.994	0.0	29.03	6.981
07	0.0	0.0	38.006	0.0
08	1.551	0.997	32.465	2.992
09	0.997	8.532	0.0	28.476
10	16.066	15.956	3.989	1.994

PWM

	A	C	G	T
01	-1.258	-0.216	1.021	-2.001
02	-1.697	0.393	-0.849	0.646
03	-0.849	-2.438	1.165	-1.277
04	-2.438	-2.438	1.103	-0.209
05	-1.697	-1.697	1.266	-2.438
06	-1.277	-2.438	1.056	-0.277
07	-2.438	-2.438	1.319	-2.438
08	-1.442	-1.697	1.165	-0.982
09	-1.697	-0.098	-2.438	1.038
10	0.489	0.482	-0.754	-1.277