We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGMEB2
(GeneCards)
ModelGMEB2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusnndTACGTvvn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words4035
TF familyGMEB {5.3.3}
TF subfamilyGMEB {5.3.3.1}
HGNCHGNC:4371
EntrezGeneGeneID:26205
(SSTAR profile)
UniProt IDGMEB2_HUMAN
UniProt ACQ9UKD1
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.1828149999999997
0.0005 3.835415
0.0001 5.787545
GTEx tissue expression atlas GMEB2 expression
ReMap ChIP-seq dataset list GMEB2 datasets
Motifs in JASPAR
MA0862.1 (GMEB2; Homo sapiens)
PCM
ACGT
01668.264994.861197.751841.436
02536.558956.7621178.5291030.463
03402.851266.661205.8781826.923
04135.56180.59694.8783391.278
052511.5688.8951157.2724.579
0626.9383499.467116.32659.581
076.8220.3193672.79122.38
0848.33140.425127.0093486.547
091560.704863.538900.782377.288
101701.148491.2031103.055406.906
11674.418866.092958.5481203.254
PWM
ACGT
01-0.3250.0720.257-0.095
02-0.5440.0330.2410.107
03-0.829-1.2390.2640.679
04-1.908-2.418-2.2591.297
050.997-4.4390.223-3.55
06-3.4661.328-2.059-2.711
07-4.649-5.9681.377-3.637
08-2.913-3.084-1.9721.325
090.522-0.069-0.027-0.894
100.608-0.6320.175-0.819
11-0.316-0.0660.0350.262