We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGRHL1
(GeneCards)
ModelGRHL1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
D
Motif rank
0
ConsensusWWCCWGTYYbnY
Best auROC (human)0.731
Best auROC (mouse)
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)
Aligned words500
TF familyGrainyhead-related factors {6.7.1}
TF subfamilyGRH-like proteins {6.7.1.1}
HGNCHGNC:17923
EntrezGeneGeneID:29841
(SSTAR profile)
UniProt IDGRHL1_HUMAN
UniProt ACQ9NZI5
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.20881
0.0005 6.00537
0.0001 7.6404250000000005
GTEx tissue expression atlas GRHL1 expression
ReMap ChIP-seq dataset list GRHL1 datasets
Motifs in JASPAR
MA0647.1 (GRHL1; Homo sapiens)
PCM
ACGT
01331.030.046.093.0
02288.06.071.0135.0
036.0477.015.02.0
047.0415.02.076.0
05163.08.092.0237.0
062.023.0447.028.0
074.083.023.0390.0
0812.0114.021.0353.0
0927.0177.016.0280.0
1037.098.099.0266.0
11114.094.0119.0173.0
1222.0396.026.056.0
PWM
ACGT
010.966-1.389-0.979-0.291
020.828-2.819-0.5560.076
03-2.8191.33-2.034-3.573
04-2.6941.191-3.573-0.49
050.263-2.584-0.3020.634
06-3.573-1.641.265-1.454
07-3.126-0.403-1.641.129
08-2.234-0.091-1.7251.03
09-1.4890.344-1.9750.8
10-1.189-0.24-0.230.749
11-0.091-0.281-0.0490.322
12-1.6811.145-1.525-0.788