We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGRHL2
(GeneCards)
ModelGRHL2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusRWCYKGTYYddChRS
Best auROC (human)0.98
Best auROC (mouse)0.966
Peak sets in benchmark (human)22
Peak sets in benchmark (mouse)4
Aligned words455
TF familyGrainyhead-related factors {6.7.1}
TF subfamilyGRH-like proteins {6.7.1.1}
HGNCHGNC:2799
EntrezGeneGeneID:79977
(SSTAR profile)
UniProt IDGRHL2_HUMAN
UniProt ACQ6ISB3
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.51571
0.0005 9.681510000000001
0.0001 14.041910000000001
GTEx tissue expression atlas GRHL2 expression
ReMap ChIP-seq dataset list GRHL2 datasets
Motifs in JASPAR
MA1105.1 (GRHL2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01235.01.019.024.011.02.00.05.075.00.016.015.022.02.04.023.0
020.0340.03.00.00.05.00.00.00.037.02.00.00.062.04.01.0
030.00.00.00.049.0281.014.0100.00.06.01.02.00.00.00.01.0
046.00.043.00.087.02.067.0131.06.00.08.01.02.01.085.015.0
050.00.0101.00.00.00.03.00.00.02.0200.01.00.00.0147.00.0
060.00.00.00.00.02.00.00.014.077.00.0360.00.00.01.00.0
073.04.00.07.01.036.00.042.00.00.01.00.011.086.01.0262.0
082.02.00.011.011.032.011.072.00.01.01.00.020.079.038.0174.0
090.02.029.02.017.022.013.062.05.02.037.06.038.029.099.091.0
1036.01.012.011.020.05.01.029.073.05.078.022.037.010.047.067.0
111.0162.02.01.00.021.00.00.00.0124.04.010.01.0125.03.00.0
120.00.00.02.0127.0188.06.0111.00.04.01.04.02.01.08.00.0
1355.01.070.03.0123.02.023.045.09.00.06.00.015.07.084.011.0
141.060.0138.03.03.02.01.04.02.039.0140.02.02.06.050.01.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
012.102-3.035-0.395-0.165-0.927-2.491-4.32-1.6760.964-4.32-0.563-0.626-0.251-2.491-1.881-0.207
02-4.322.471-2.14-4.32-4.32-1.676-4.32-4.32-4.320.262-2.491-4.32-4.320.774-1.881-3.035
03-4.32-4.32-4.32-4.320.5412.281-0.6931.25-4.32-1.505-3.035-2.491-4.32-4.32-4.32-3.035
04-1.505-4.320.411-4.321.111-2.4910.8511.519-1.505-4.32-1.233-3.035-2.491-3.0351.088-0.626
05-4.32-4.321.26-4.32-4.32-4.32-2.14-4.32-4.32-2.4911.941-3.035-4.32-4.321.634-4.32
06-4.32-4.32-4.32-4.32-4.32-2.491-4.32-4.32-0.6930.99-4.322.528-4.32-4.32-3.035-4.32
07-2.14-1.881-4.32-1.36-3.0350.235-4.320.388-4.32-4.32-3.035-4.32-0.9271.1-3.0352.211
08-2.491-2.491-4.32-0.927-0.9270.119-0.9270.923-4.32-3.035-3.035-4.32-0.3441.0150.2891.802
09-4.32-2.4910.022-2.491-0.503-0.251-0.7650.774-1.676-2.4910.262-1.5050.2890.0221.241.156
100.235-3.035-0.843-0.927-0.344-1.676-3.0350.0220.937-1.6761.003-0.2510.262-1.0190.4990.851
11-3.0351.731-2.491-3.035-4.32-0.296-4.32-4.32-4.321.464-1.881-1.019-3.0351.472-2.14-4.32
12-4.32-4.32-4.32-2.4911.4881.88-1.5051.354-4.32-1.881-3.035-1.881-2.491-3.035-1.233-4.32
130.655-3.0350.895-2.141.456-2.491-0.2070.456-1.12-4.32-1.505-4.32-0.626-1.361.076-0.927
14-3.0350.7421.571-2.14-2.14-2.491-3.035-1.881-2.4910.3141.585-2.491-2.491-1.5050.561-3.035