We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGRHL2
(GeneCards)
ModelGRHL2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusRWCYdGTYbddC
Best auROC (human)0.96
Best auROC (mouse)0.921
Peak sets in benchmark (human)22
Peak sets in benchmark (mouse)4
Aligned words497
TF familyGrainyhead-related factors {6.7.1}
TF subfamilyGRH-like proteins {6.7.1.1}
HGNCHGNC:2799
EntrezGeneGeneID:79977
(SSTAR profile)
UniProt IDGRHL2_HUMAN
UniProt ACQ6ISB3
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.546609999999999
0.0005 5.5286550000000005
0.0001 7.468109999999999
GTEx tissue expression atlas GRHL2 expression
ReMap ChIP-seq dataset list GRHL2 datasets
Motifs in JASPAR
MA1105.1 (GRHL2; Homo sapiens)
PCM
ACGT
01368.014.064.051.0
02387.08.044.058.0
030.0496.01.00.0
0422.0355.04.0116.0
05112.017.0153.0215.0
062.01.0494.00.0
0712.0126.02.0357.0
087.0192.05.0293.0
0961.0119.071.0246.0
1088.028.0230.0151.0
11174.032.0167.0124.0
121.0454.014.028.0
PWM
ACGT
011.078-2.091-0.652-0.873
021.128-2.578-1.016-0.748
03-4.3951.375-3.898-4.395
04-1.6751.042-3.121-0.068
05-0.102-1.9140.2060.543
06-3.567-3.8981.371-4.395
07-2.2280.014-3.5671.047
08-2.6890.431-2.9550.851
09-0.699-0.043-0.550.677
10-0.34-1.4490.610.193
110.333-1.3220.293-0.002
12-3.8981.287-2.091-1.449