We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGrhl2
ModelGRHL2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusRCYdGTYYddChRGh
Best auROC (human)0.965
Best auROC (mouse)0.982
Peak sets in benchmark (human)22
Peak sets in benchmark (mouse)4
Aligned words501
TF familyGrainyhead-related factors {6.7.1}
TF subfamilyGRH-like proteins {6.7.1.1}
MGIMGI:2182543
EntrezGeneGeneID:252973
(SSTAR profile)
UniProt IDGRHL2_MOUSE
UniProt ACQ8K5C0
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.870610000000001
0.0005 10.11466
0.0001 14.99056
GTEx tissue expression atlas Grhl2 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.0287.00.00.00.014.00.00.00.0100.01.00.00.094.03.01.0
020.00.00.00.098.0289.02.0106.00.02.00.02.00.00.00.01.0
0317.03.078.00.061.09.069.0152.00.00.02.00.09.08.053.039.0
040.00.087.00.01.01.018.00.00.00.0202.00.01.01.0189.00.0
050.01.00.01.00.01.00.01.06.084.00.0406.00.00.00.00.0
064.00.00.02.00.042.00.044.00.00.00.00.012.0150.05.0241.0
072.00.00.014.012.049.06.0125.00.00.00.05.023.094.025.0145.0
082.06.020.09.051.013.08.071.08.01.019.03.040.018.0113.0118.0
0932.04.044.021.015.05.01.017.072.06.042.040.028.07.038.0128.0
100.0140.03.04.00.020.00.02.00.0109.05.011.01.0202.01.02.0
110.01.00.00.0147.0207.08.0109.00.05.02.02.04.06.08.01.0
1267.00.084.00.0122.04.022.071.016.00.02.00.017.01.075.019.0
130.048.0173.01.00.01.04.00.02.046.0135.00.01.03.085.01.0
140.00.02.01.038.018.02.040.067.078.024.0228.01.01.00.00.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-4.42.206-4.4-4.4-4.4-0.788-4.4-4.4-4.41.155-3.126-4.4-4.41.093-2.234-3.126
02-4.4-4.4-4.4-4.41.1352.213-2.5841.213-4.4-2.584-4.4-2.584-4.4-4.4-4.4-3.126
03-0.599-2.2340.907-4.40.663-1.2150.7851.572-4.4-4.4-2.584-4.4-1.215-1.3280.5230.219
04-4.4-4.41.016-4.4-3.126-3.126-0.543-4.4-4.4-4.41.856-4.4-3.126-3.1261.789-4.4
05-4.4-3.126-4.4-3.126-4.4-3.126-4.4-3.126-1.60.981-4.42.553-4.4-4.4-4.4-4.4
06-1.975-4.4-4.4-2.584-4.40.293-4.40.339-4.4-4.4-4.4-4.4-0.9381.559-1.772.032
07-2.584-4.4-4.4-0.788-0.9380.445-1.61.377-4.4-4.4-4.4-1.77-0.3021.093-0.221.525
08-2.584-1.6-0.439-1.2150.485-0.86-1.3280.814-1.328-3.126-0.49-2.2340.244-0.5431.2761.32
090.023-1.9750.339-0.392-0.721-1.77-3.126-0.5990.828-1.60.2930.244-0.108-1.4540.1931.401
10-4.41.49-2.234-1.975-4.4-0.439-4.4-2.584-4.41.241-1.77-1.022-3.1261.856-3.126-2.584
11-4.4-3.126-4.4-4.41.5391.88-1.3281.241-4.4-1.77-2.584-2.584-1.975-1.6-1.328-3.126
120.756-4.40.981-4.41.353-1.975-0.3460.814-0.658-4.4-2.584-4.4-0.599-3.1260.868-0.49
13-4.40.4251.701-3.126-4.4-3.126-1.975-4.4-2.5840.3831.454-4.4-3.126-2.2340.993-3.126
14-4.4-4.4-2.584-3.1260.193-0.543-2.5840.2440.7560.907-0.261.977-3.126-3.126-4.4-4.4