Model info
| Transcription factor | Grhl2 | ||||||||
| Model | GRHL2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RRCYdGTYYddC | ||||||||
| Best auROC (human) | 0.951 | ||||||||
| Best auROC (mouse) | 0.951 | ||||||||
| Peak sets in benchmark (human) | 22 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Grainyhead-related factors {6.7.1} | ||||||||
| TF subfamily | GRH-like proteins {6.7.1.1} | ||||||||
| MGI | MGI:2182543 | ||||||||
| EntrezGene | GeneID:252973 (SSTAR profile) | ||||||||
| UniProt ID | GRHL2_MOUSE | ||||||||
| UniProt AC | Q8K5C0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Grhl2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 346.0 | 9.0 | 96.0 | 49.0 |
| 02 | 326.0 | 2.0 | 89.0 | 83.0 |
| 03 | 0.0 | 493.0 | 7.0 | 0.0 |
| 04 | 65.0 | 355.0 | 2.0 | 78.0 |
| 05 | 113.0 | 9.0 | 152.0 | 226.0 |
| 06 | 0.0 | 2.0 | 498.0 | 0.0 |
| 07 | 16.0 | 103.0 | 0.0 | 381.0 |
| 08 | 14.0 | 176.0 | 10.0 | 300.0 |
| 09 | 32.0 | 113.0 | 28.0 | 327.0 |
| 10 | 58.0 | 24.0 | 186.0 | 232.0 |
| 11 | 131.0 | 29.0 | 149.0 | 191.0 |
| 12 | 0.0 | 459.0 | 4.0 | 37.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.01 | -2.484 | -0.26 | -0.918 |
| 02 | 0.951 | -3.573 | -0.335 | -0.403 |
| 03 | -4.4 | 1.363 | -2.694 | -4.4 |
| 04 | -0.643 | 1.036 | -3.573 | -0.464 |
| 05 | -0.1 | -2.484 | 0.193 | 0.587 |
| 06 | -4.4 | -3.573 | 1.373 | -4.4 |
| 07 | -1.975 | -0.191 | -4.4 | 1.106 |
| 08 | -2.096 | 0.339 | -2.394 | 0.868 |
| 09 | -1.328 | -0.1 | -1.454 | 0.954 |
| 10 | -0.754 | -1.6 | 0.393 | 0.613 |
| 11 | 0.046 | -1.421 | 0.174 | 0.42 |
| 12 | -4.4 | 1.292 | -3.126 | -1.189 |