We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGSC2
(GeneCards)
ModelGSC2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusddvGGATKRRn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words610
TF familyPaired-related HD factors {3.1.3}
TF subfamilyGSC {3.1.3.9}
HGNCHGNC:4613
EntrezGeneGeneID:2928
(SSTAR profile)
UniProt IDGSC2_HUMAN
UniProt ACO15499
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.879335
0.0005 5.640495
0.0001 7.052695
GTEx tissue expression atlas GSC2 expression
ReMap ChIP-seq dataset list GSC2 datasets
Motifs in JASPAR
PCM
ACGT
01260.2538.25253.2558.25
0272.035.0283.0220.0
03148.5286.5116.558.5
0415.061.0530.04.0
0523.04.0581.02.0
06355.00.0255.00.0
0720.039.01.0550.0
0819.015.0181.0395.0
09352.013.0217.028.0
10121.7534.75396.7556.75
1186.75144.75218.75159.75
PWM
ACGT
010.53-1.3520.503-0.946
02-0.739-1.4370.6130.363
03-0.0260.626-0.266-0.942
04-2.228-0.9011.238-3.314
05-1.835-3.3141.33-3.756
060.839-4.5660.51-4.566
07-1.965-1.334-4.0811.275
08-2.012-2.2280.170.945
090.831-2.3560.35-1.65
10-0.223-1.4440.95-0.971
11-0.556-0.0520.3580.046