Model info
| Transcription factor | GSX1 (GeneCards) | ||||||||
| Model | GSX1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hRATKRvndddWdRK | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 277 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | GSX {3.1.1.12} | ||||||||
| HGNC | HGNC:20374 | ||||||||
| EntrezGene | GeneID:219409 (SSTAR profile) | ||||||||
| UniProt ID | GSX1_HUMAN | ||||||||
| UniProt AC | Q9H4S2 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GSX1 expression | ||||||||
| ReMap ChIP-seq dataset list | GSX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 26.75 | 26.75 | 18.75 | 203.75 |
| 02 | 198.5 | 27.5 | 29.5 | 20.5 |
| 03 | 261.0 | 2.0 | 7.0 | 6.0 |
| 04 | 10.25 | 5.25 | 1.25 | 259.25 |
| 05 | 12.0 | 2.0 | 57.0 | 205.0 |
| 06 | 188.0 | 3.0 | 77.0 | 8.0 |
| 07 | 49.0 | 46.0 | 146.0 | 35.0 |
| 08 | 65.0 | 56.0 | 66.0 | 89.0 |
| 09 | 78.0 | 25.0 | 67.0 | 106.0 |
| 10 | 83.0 | 25.0 | 56.0 | 112.0 |
| 11 | 53.0 | 21.0 | 49.0 | 153.0 |
| 12 | 46.5 | 24.5 | 38.5 | 166.5 |
| 13 | 141.75 | 25.75 | 53.75 | 54.75 |
| 14 | 175.5 | 25.5 | 40.5 | 34.5 |
| 15 | 39.25 | 23.25 | 49.25 | 164.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.917 | -0.917 | -1.251 | 1.07 |
| 02 | 1.044 | -0.89 | -0.823 | -1.168 |
| 03 | 1.316 | -3.029 | -2.125 | -2.252 |
| 04 | -1.799 | -2.359 | -3.278 | 1.309 |
| 05 | -1.659 | -3.029 | -0.187 | 1.076 |
| 06 | 0.99 | -2.772 | 0.108 | -2.013 |
| 07 | -0.334 | -0.396 | 0.739 | -0.66 |
| 08 | -0.058 | -0.204 | -0.044 | 0.25 |
| 09 | 0.12 | -0.981 | -0.029 | 0.422 |
| 10 | 0.181 | -0.981 | -0.204 | 0.477 |
| 11 | -0.258 | -1.145 | -0.334 | 0.785 |
| 12 | -0.385 | -1.0 | -0.568 | 0.869 |
| 13 | 0.71 | -0.953 | -0.244 | -0.226 |
| 14 | 0.921 | -0.962 | -0.519 | -0.673 |
| 15 | -0.549 | -1.049 | -0.329 | 0.856 |