We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGSX1
(GeneCards)
ModelGSX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length15
Quality
D
Motif rank
0
ConsensushRATKRvndddWdRK
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words277
TF familyHOX-related factors {3.1.1}
TF subfamilyGSX {3.1.1.12}
HGNCHGNC:20374
EntrezGeneGeneID:219409
(SSTAR profile)
UniProt IDGSX1_HUMAN
UniProt ACQ9H4S2
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.9901599999999995
0.0005 6.662310000000001
0.0001 8.029710000000001
GTEx tissue expression atlas GSX1 expression
ReMap ChIP-seq dataset list GSX1 datasets
Motifs in JASPAR
PCM
ACGT
0126.7526.7518.75203.75
02198.527.529.520.5
03261.02.07.06.0
0410.255.251.25259.25
0512.02.057.0205.0
06188.03.077.08.0
0749.046.0146.035.0
0865.056.066.089.0
0978.025.067.0106.0
1083.025.056.0112.0
1153.021.049.0153.0
1246.524.538.5166.5
13141.7525.7553.7554.75
14175.525.540.534.5
1539.2523.2549.25164.25
PWM
ACGT
01-0.917-0.917-1.2511.07
021.044-0.89-0.823-1.168
031.316-3.029-2.125-2.252
04-1.799-2.359-3.2781.309
05-1.659-3.029-0.1871.076
060.99-2.7720.108-2.013
07-0.334-0.3960.739-0.66
08-0.058-0.204-0.0440.25
090.12-0.981-0.0290.422
100.181-0.981-0.2040.477
11-0.258-1.145-0.3340.785
12-0.385-1.0-0.5680.869
130.71-0.953-0.244-0.226
140.921-0.962-0.519-0.673
15-0.549-1.049-0.3290.856