Model info
| Transcription factor | GSX2 (GeneCards) | ||||||||
| Model | GSX2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bTAATKRvnddWWWAY | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 6133 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | GSX {3.1.1.12} | ||||||||
| HGNC | HGNC:24959 | ||||||||
| EntrezGene | GeneID:170825 (SSTAR profile) | ||||||||
| UniProt ID | GSX2_HUMAN | ||||||||
| UniProt AC | Q9BZM3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GSX2 expression | ||||||||
| ReMap ChIP-seq dataset list | GSX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 939.0 | 1966.0 | 959.0 | 2269.0 |
| 02 | 406.25 | 354.25 | 127.25 | 5245.25 |
| 03 | 5411.5 | 172.5 | 294.5 | 254.5 |
| 04 | 6077.25 | 11.25 | 31.25 | 13.25 |
| 05 | 158.0 | 328.0 | 118.0 | 5529.0 |
| 06 | 795.0 | 303.0 | 1526.0 | 3509.0 |
| 07 | 3485.0 | 355.0 | 1845.0 | 448.0 |
| 08 | 1225.0 | 1553.0 | 2536.0 | 819.0 |
| 09 | 1795.0 | 1213.0 | 990.0 | 2135.0 |
| 10 | 1915.0 | 777.0 | 943.0 | 2498.0 |
| 11 | 1890.0 | 605.0 | 606.0 | 3032.0 |
| 12 | 1162.0 | 727.0 | 544.0 | 3700.0 |
| 13 | 945.25 | 349.25 | 393.25 | 4445.25 |
| 14 | 4501.75 | 294.75 | 659.75 | 676.75 |
| 15 | 5184.25 | 207.25 | 337.25 | 404.25 |
| 16 | 708.5 | 725.5 | 625.5 | 4073.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.489 | 0.248 | -0.468 | 0.391 |
| 02 | -1.324 | -1.46 | -2.473 | 1.229 |
| 03 | 1.26 | -2.174 | -1.644 | -1.789 |
| 04 | 1.376 | -4.739 | -3.827 | -4.6 |
| 05 | -2.26 | -1.537 | -2.548 | 1.282 |
| 06 | -0.655 | -1.616 | -0.005 | 0.827 |
| 07 | 0.82 | -1.458 | 0.185 | -1.227 |
| 08 | -0.224 | 0.013 | 0.503 | -0.626 |
| 09 | 0.157 | -0.234 | -0.437 | 0.331 |
| 10 | 0.222 | -0.678 | -0.485 | 0.488 |
| 11 | 0.209 | -0.928 | -0.926 | 0.681 |
| 12 | -0.277 | -0.745 | -1.034 | 0.88 |
| 13 | -0.483 | -1.475 | -1.357 | 1.064 |
| 14 | 1.076 | -1.643 | -0.841 | -0.816 |
| 15 | 1.217 | -1.992 | -1.509 | -1.329 |
| 16 | -0.77 | -0.747 | -0.895 | 0.976 |