Transcription factor | HAND1 (GeneCards) | ||||||||
Model | HAND1_HUMAN.H11MO.1.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 7 | ||||||||
Quality | D | ||||||||
Motif rank | 1 | ||||||||
Consensus | dSYCTGS | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.951 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 500 | ||||||||
TF family | Tal-related factors {1.2.3} | ||||||||
TF subfamily | Twist-like factors {1.2.3.2} | ||||||||
HGNC | HGNC:4807 | ||||||||
EntrezGene | GeneID:9421 (SSTAR profile) | ||||||||
UniProt ID | HAND1_HUMAN | ||||||||
UniProt AC | O96004 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | HAND1 expression | ||||||||
ReMap ChIP-seq dataset list | HAND1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 76.0 | 26.0 | 256.0 | 142.0 |
02 | 33.0 | 169.0 | 266.0 | 32.0 |
03 | 9.0 | 265.0 | 11.0 | 215.0 |
04 | 1.0 | 497.0 | 1.0 | 1.0 |
05 | 1.0 | 1.0 | 1.0 | 497.0 |
06 | 0.0 | 0.0 | 499.0 | 1.0 |
07 | 7.0 | 70.0 | 370.0 | 53.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.49 | -1.525 | 0.711 | 0.126 |
02 | -1.298 | 0.298 | 0.749 | -1.328 |
03 | -2.484 | 0.745 | -2.311 | 0.537 |
04 | -3.903 | 1.371 | -3.903 | -3.903 |
05 | -3.903 | -3.903 | -3.903 | 1.371 |
06 | -4.4 | -4.4 | 1.375 | -3.903 |
07 | -2.694 | -0.57 | 1.077 | -0.841 |