We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHand1
ModelHAND1_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
C
Motif rank
0
ConsensusnddvYCTGShhWnYvTCWn
Best auROC (human)
Best auROC (mouse)0.998
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words505
TF familyTal-related factors {1.2.3}
TF subfamilyTwist-like factors {1.2.3.2}
MGIMGI:103577
EntrezGeneGeneID:15110
(SSTAR profile)
UniProt IDHAND1_MOUSE
UniProt ACQ64279
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.36451
0.0005 11.43576
0.0001 15.61776
GTEx tissue expression atlas Hand1 expression
Motifs in JASPAR
MA0092.1 (Hand1::Tcf3; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0116.09.071.013.039.012.09.037.044.023.069.025.04.015.096.018.0
0213.08.067.015.09.09.08.033.036.038.0116.055.011.012.055.015.0
036.023.034.06.020.016.010.021.041.049.0126.030.020.034.059.05.0
041.035.01.050.07.039.00.076.011.0110.019.089.01.022.08.031.0
051.019.00.00.011.0192.01.02.01.026.01.00.03.0241.02.00.0
060.00.00.016.05.00.00.0473.00.00.00.04.00.00.00.02.0
070.00.05.00.00.00.00.00.00.00.00.00.00.01.0493.01.0
080.00.00.00.00.00.00.01.01.099.0329.069.00.00.01.00.0
090.00.01.00.013.013.04.069.089.0103.045.093.02.015.015.038.0
1031.018.029.026.019.026.00.086.022.014.011.018.026.047.018.0109.0
1143.08.03.044.047.05.01.052.028.09.02.019.053.041.06.0139.0
1246.020.076.029.04.027.02.030.01.05.04.02.042.064.058.090.0
130.028.03.062.04.026.00.086.06.026.014.094.07.047.015.082.0
144.06.05.02.044.036.020.027.08.017.05.02.028.087.0182.027.0
150.00.04.080.04.07.00.0135.06.07.020.0179.01.03.01.053.0
160.07.02.02.03.012.02.00.01.020.02.02.08.0386.022.031.0
179.01.01.01.0263.041.017.0104.06.09.01.012.017.03.05.010.0
1876.079.0102.038.018.012.04.020.09.04.08.03.022.033.044.028.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.658-1.2150.814-0.860.219-0.938-1.2150.1670.339-0.3020.785-0.22-1.975-0.7211.114-0.543
02-0.86-1.3280.756-0.721-1.215-1.215-1.3280.0540.140.1931.3030.56-1.022-0.9380.56-0.721
03-1.6-0.3020.083-1.6-0.439-0.658-1.114-0.3920.2690.4451.385-0.04-0.4390.0830.63-1.77
04-3.1260.112-3.1260.465-1.4540.219-4.40.881-1.0221.25-0.491.039-3.126-0.346-1.328-0.008
05-3.126-0.49-4.4-4.4-1.0221.805-3.126-2.584-3.126-0.181-3.126-4.4-2.2342.032-2.584-4.4
06-4.4-4.4-4.4-0.658-1.77-4.4-4.42.706-4.4-4.4-4.4-1.975-4.4-4.4-4.4-2.584
07-4.4-4.4-1.77-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.1262.747-3.126
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-3.1261.1452.3430.785-4.4-4.4-3.126-4.4
09-4.4-4.4-3.126-4.4-0.86-0.86-1.9750.7851.0391.1840.3611.082-2.584-0.721-0.7210.193
10-0.008-0.543-0.074-0.181-0.49-0.181-4.41.004-0.346-0.788-1.022-0.543-0.1810.404-0.5431.241
110.316-1.328-2.2340.3390.404-1.77-3.1260.504-0.108-1.215-2.584-0.490.5230.269-1.61.483
120.383-0.4390.881-0.074-1.975-0.144-2.584-0.04-3.126-1.77-1.975-2.5840.2930.7110.6131.05
13-4.4-0.108-2.2340.679-1.975-0.181-4.41.004-1.6-0.181-0.7881.093-1.4540.404-0.7210.957
14-1.975-1.6-1.77-2.5840.3390.14-0.439-0.144-1.328-0.599-1.77-2.584-0.1081.0161.752-0.144
15-4.4-4.4-1.9750.932-1.975-1.454-4.41.454-1.6-1.454-0.4391.735-3.126-2.234-3.1260.523
16-4.4-1.454-2.584-2.584-2.234-0.938-2.584-4.4-3.126-0.439-2.584-2.584-1.3282.502-0.346-0.008
17-1.215-3.126-3.126-3.1262.1190.269-0.5991.194-1.6-1.215-3.126-0.938-0.599-2.234-1.77-1.114
180.8810.921.1740.193-0.543-0.938-1.975-0.439-1.215-1.975-1.328-2.234-0.3460.0540.339-0.108