Model info
| Transcription factor | Hand1 | ||||||||
| Model | HAND1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddbYCTGShhWnYvTCW | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.995 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Twist-like factors {1.2.3.2} | ||||||||
| MGI | MGI:103577 | ||||||||
| EntrezGene | GeneID:15110 (SSTAR profile) | ||||||||
| UniProt ID | HAND1_MOUSE | ||||||||
| UniProt AC | Q64279 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hand1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 121.0 | 57.0 | 220.0 | 102.0 |
| 02 | 77.0 | 66.0 | 248.0 | 109.0 |
| 03 | 68.0 | 133.0 | 226.0 | 73.0 |
| 04 | 19.0 | 201.0 | 26.0 | 254.0 |
| 05 | 12.0 | 474.0 | 3.0 | 11.0 |
| 06 | 8.0 | 0.0 | 0.0 | 492.0 |
| 07 | 1.0 | 1.0 | 494.0 | 4.0 |
| 08 | 1.0 | 112.0 | 307.0 | 80.0 |
| 09 | 91.0 | 152.0 | 63.0 | 194.0 |
| 10 | 96.0 | 126.0 | 47.0 | 231.0 |
| 11 | 168.0 | 51.0 | 14.0 | 267.0 |
| 12 | 89.0 | 111.0 | 146.0 | 154.0 |
| 13 | 25.0 | 118.0 | 37.0 | 320.0 |
| 14 | 85.0 | 156.0 | 199.0 | 60.0 |
| 15 | 12.0 | 13.0 | 17.0 | 458.0 |
| 16 | 10.0 | 434.0 | 25.0 | 31.0 |
| 17 | 306.0 | 54.0 | 18.0 | 122.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.032 | -0.771 | 0.56 | -0.201 |
| 02 | -0.477 | -0.628 | 0.679 | -0.135 |
| 03 | -0.599 | 0.061 | 0.587 | -0.529 |
| 04 | -1.818 | 0.47 | -1.525 | 0.703 |
| 05 | -2.234 | 1.324 | -3.325 | -2.311 |
| 06 | -2.584 | -4.4 | -4.4 | 1.361 |
| 07 | -3.903 | -3.903 | 1.365 | -3.126 |
| 08 | -3.903 | -0.108 | 0.891 | -0.439 |
| 09 | -0.313 | 0.193 | -0.673 | 0.435 |
| 10 | -0.26 | 0.008 | -0.958 | 0.608 |
| 11 | 0.293 | -0.879 | -2.096 | 0.752 |
| 12 | -0.335 | -0.117 | 0.154 | 0.206 |
| 13 | -1.561 | -0.057 | -1.189 | 0.932 |
| 14 | -0.38 | 0.219 | 0.46 | -0.721 |
| 15 | -2.234 | -2.163 | -1.92 | 1.29 |
| 16 | -2.394 | 1.236 | -1.561 | -1.358 |
| 17 | 0.888 | -0.823 | -1.868 | -0.024 |