We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHand1
ModelHAND1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
C
Motif rank
0
ConsensusddbYCTGShhWnYvTCW
Best auROC (human)
Best auROC (mouse)0.995
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words500
TF familyTal-related factors {1.2.3}
TF subfamilyTwist-like factors {1.2.3.2}
MGIMGI:103577
EntrezGeneGeneID:15110
(SSTAR profile)
UniProt IDHAND1_MOUSE
UniProt ACQ64279
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.92186
0.0005 5.8941099999999995
0.0001 7.8723600000000005
GTEx tissue expression atlas Hand1 expression
Motifs in JASPAR
MA0092.1 (Hand1::Tcf3; Mus musculus)
PCM
ACGT
01121.057.0220.0102.0
0277.066.0248.0109.0
0368.0133.0226.073.0
0419.0201.026.0254.0
0512.0474.03.011.0
068.00.00.0492.0
071.01.0494.04.0
081.0112.0307.080.0
0991.0152.063.0194.0
1096.0126.047.0231.0
11168.051.014.0267.0
1289.0111.0146.0154.0
1325.0118.037.0320.0
1485.0156.0199.060.0
1512.013.017.0458.0
1610.0434.025.031.0
17306.054.018.0122.0
PWM
ACGT
01-0.032-0.7710.56-0.201
02-0.477-0.6280.679-0.135
03-0.5990.0610.587-0.529
04-1.8180.47-1.5250.703
05-2.2341.324-3.325-2.311
06-2.584-4.4-4.41.361
07-3.903-3.9031.365-3.126
08-3.903-0.1080.891-0.439
09-0.3130.193-0.6730.435
10-0.260.008-0.9580.608
110.293-0.879-2.0960.752
12-0.335-0.1170.1540.206
13-1.561-0.057-1.1890.932
14-0.380.2190.46-0.721
15-2.234-2.163-1.921.29
16-2.3941.236-1.561-1.358
170.888-0.823-1.868-0.024