We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHand1
ModelHAND1_MOUSE.H11MO.1.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length7
Quality
C
Motif rank
1
ConsensusdSYCTGS
Best auROC (human)
Best auROC (mouse)0.951
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words500
TF familyTal-related factors {1.2.3}
TF subfamilyTwist-like factors {1.2.3.2}
MGIMGI:103577
EntrezGeneGeneID:15110
(SSTAR profile)
UniProt IDHAND1_MOUSE
UniProt ACQ64279
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.513375
0.0005 6.301495
0.0001 7.092065
GTEx tissue expression atlas Hand1 expression
Motifs in JASPAR
PCM
ACGT
0176.026.0256.0142.0
0233.0169.0266.032.0
039.0265.011.0215.0
041.0497.01.01.0
051.01.01.0497.0
060.00.0499.01.0
077.070.0370.053.0
PWM
ACGT
01-0.49-1.5250.7110.126
02-1.2980.2980.749-1.328
03-2.4840.745-2.3110.537
04-3.9031.371-3.903-3.903
05-3.903-3.903-3.9031.371
06-4.4-4.41.375-3.903
07-2.694-0.571.077-0.841