Model info
| Transcription factor | Hand1 | ||||||||
| Model | HAND1_MOUSE.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 7 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dSYCTGS | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.951 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Twist-like factors {1.2.3.2} | ||||||||
| MGI | MGI:103577 | ||||||||
| EntrezGene | GeneID:15110 (SSTAR profile) | ||||||||
| UniProt ID | HAND1_MOUSE | ||||||||
| UniProt AC | Q64279 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hand1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 76.0 | 26.0 | 256.0 | 142.0 |
| 02 | 33.0 | 169.0 | 266.0 | 32.0 |
| 03 | 9.0 | 265.0 | 11.0 | 215.0 |
| 04 | 1.0 | 497.0 | 1.0 | 1.0 |
| 05 | 1.0 | 1.0 | 1.0 | 497.0 |
| 06 | 0.0 | 0.0 | 499.0 | 1.0 |
| 07 | 7.0 | 70.0 | 370.0 | 53.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.49 | -1.525 | 0.711 | 0.126 |
| 02 | -1.298 | 0.298 | 0.749 | -1.328 |
| 03 | -2.484 | 0.745 | -2.311 | 0.537 |
| 04 | -3.903 | 1.371 | -3.903 | -3.903 |
| 05 | -3.903 | -3.903 | -3.903 | 1.371 |
| 06 | -4.4 | -4.4 | 1.375 | -3.903 |
| 07 | -2.694 | -0.57 | 1.077 | -0.841 |