We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHBP1
(GeneCards)
ModelHBP1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length9
Quality
D
Motif rank
0
ConsensusRnYSATTGA
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words5
TF familySOX-related factors {4.1.1}
TF subfamilyFurther Sox-related factors {4.1.1.9}
HGNCHGNC:23200
EntrezGeneGeneID:26959
(SSTAR profile)
UniProt IDHBP1_HUMAN
UniProt ACO60381
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.459665
0.0005 5.94482
0.0001 7.173715
GTEx tissue expression atlas HBP1 expression
ReMap ChIP-seq dataset list HBP1 datasets
Motifs in JASPAR
PCM
ACGT
012.9020.4021.2950.402
020.02.50.02.5
030.8931.6070.02.5
040.03.3040.8930.804
055.00.00.00.0
060.00.00.05.0
070.00.00.05.0
080.00.8044.1960.0
095.00.00.00.0
PWM
ACGT
010.693-0.720.027-0.72
02-1.4130.563-1.4130.563
03-0.2440.196-1.4130.563
04-1.4130.808-0.244-0.315
051.185-1.413-1.413-1.413
06-1.413-1.413-1.4131.185
07-1.413-1.413-1.4131.185
08-1.413-0.3151.024-1.413
091.185-1.413-1.413-1.413