Model info
| Transcription factor | Hbp1 | ||||||||
| Model | HBP1_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 9 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RnYSATTGA | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 5 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Further Sox-related factors {4.1.1.9} | ||||||||
| MGI | MGI:894659 | ||||||||
| EntrezGene | GeneID:73389 (SSTAR profile) | ||||||||
| UniProt ID | HBP1_MOUSE | ||||||||
| UniProt AC | Q8R316 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hbp1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.902 | 0.402 | 1.295 | 0.402 |
| 02 | 0.0 | 2.5 | 0.0 | 2.5 |
| 03 | 0.893 | 1.607 | 0.0 | 2.5 |
| 04 | 0.0 | 3.304 | 0.893 | 0.804 |
| 05 | 5.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 5.0 |
| 07 | 0.0 | 0.0 | 0.0 | 5.0 |
| 08 | 0.0 | 0.804 | 4.196 | 0.0 |
| 09 | 5.0 | 0.0 | 0.0 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.693 | -0.72 | 0.027 | -0.72 |
| 02 | -1.413 | 0.563 | -1.413 | 0.563 |
| 03 | -0.244 | 0.196 | -1.413 | 0.563 |
| 04 | -1.413 | 0.808 | -0.244 | -0.315 |
| 05 | 1.185 | -1.413 | -1.413 | -1.413 |
| 06 | -1.413 | -1.413 | -1.413 | 1.185 |
| 07 | -1.413 | -1.413 | -1.413 | 1.185 |
| 08 | -1.413 | -0.315 | 1.024 | -1.413 |
| 09 | 1.185 | -1.413 | -1.413 | -1.413 |