Model info
| Transcription factor | Nhlh1 | ||||||||
| Model | HEN1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 20 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bKGGnMbCAGCTGCGKCYhh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 55 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Tal / HEN-like factors {1.2.3.1} | ||||||||
| MGI | MGI:98481 | ||||||||
| EntrezGene | GeneID:18071 (SSTAR profile) | ||||||||
| UniProt ID | HEN1_MOUSE | ||||||||
| UniProt AC | Q02576 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nhlh1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6.586 | 12.665 | 16.138 | 19.611 |
| 02 | 6.078 | 5.21 | 35.029 | 8.683 |
| 03 | 1.737 | 1.737 | 42.843 | 8.683 |
| 04 | 5.21 | 0.0 | 47.185 | 2.605 |
| 05 | 6.947 | 6.947 | 25.477 | 15.63 |
| 06 | 27.214 | 25.181 | 2.605 | 0.0 |
| 07 | 6.947 | 7.815 | 24.313 | 15.925 |
| 08 | 2.605 | 50.658 | 1.737 | 0.0 |
| 09 | 53.263 | 0.868 | 0.868 | 0.0 |
| 10 | 0.0 | 4.342 | 48.053 | 2.605 |
| 11 | 0.0 | 55.0 | 0.0 | 0.0 |
| 12 | 3.473 | 0.0 | 0.0 | 51.527 |
| 13 | 0.0 | 0.0 | 54.132 | 0.868 |
| 14 | 0.868 | 48.922 | 3.473 | 1.737 |
| 15 | 2.605 | 0.868 | 45.448 | 6.078 |
| 16 | 0.0 | 12.157 | 15.63 | 27.214 |
| 17 | 0.868 | 48.922 | 3.473 | 1.737 |
| 18 | 5.21 | 38.502 | 4.342 | 6.947 |
| 19 | 6.078 | 23.445 | 5.21 | 20.267 |
| 20 | 7.02 | 21.782 | 3.547 | 22.65 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.665 | -0.076 | 0.15 | 0.335 |
| 02 | -0.734 | -0.865 | 0.893 | -0.421 |
| 03 | -1.684 | -1.684 | 1.089 | -0.421 |
| 04 | -0.865 | -2.69 | 1.184 | -1.409 |
| 05 | -0.618 | -0.618 | 0.585 | 0.12 |
| 06 | 0.649 | 0.574 | -1.409 | -2.69 |
| 07 | -0.618 | -0.515 | 0.54 | 0.138 |
| 08 | -1.409 | 1.253 | -1.684 | -2.69 |
| 09 | 1.303 | -2.065 | -2.065 | -2.69 |
| 10 | -2.69 | -1.015 | 1.202 | -1.409 |
| 11 | -2.69 | 1.334 | -2.69 | -2.69 |
| 12 | -1.193 | -2.69 | -2.69 | 1.27 |
| 13 | -2.69 | -2.69 | 1.318 | -2.065 |
| 14 | -2.065 | 1.219 | -1.193 | -1.684 |
| 15 | -1.409 | -2.065 | 1.147 | -0.734 |
| 16 | -2.69 | -0.114 | 0.12 | 0.649 |
| 17 | -2.065 | 1.219 | -1.193 | -1.684 |
| 18 | -0.865 | 0.985 | -1.015 | -0.618 |
| 19 | -0.734 | 0.505 | -0.865 | 0.366 |
| 20 | -0.609 | 0.435 | -1.176 | 0.472 |