We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHES5
(GeneCards)
ModelHES5_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length12
Quality
D
Motif rank
0
ConsensushGGCACGTGYCd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words6731
TF familyHairy-related factors {1.2.4}
TF subfamilyHairy-like factors {1.2.4.1}
HGNCHGNC:19764
EntrezGeneGeneID:388585
(SSTAR profile)
UniProt IDHES5_HUMAN
UniProt ACQ5TA89
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 -4.41079
0.0005 -2.538725
0.0001 1.15496
GTEx tissue expression atlas HES5 expression
ReMap ChIP-seq dataset list HES5 datasets
Motifs in JASPAR
MA0821.1 (HES5; Homo sapiens)
PCM
ACGT
011441.2161603.2471124.6473092.078
02270.898246.6536499.489244.147
03176.6414.7857065.5344.229
044.0727230.80225.3740.94
057254.9230.04.3861.88
060.07254.9235.6390.627
070.6270.07260.5610.0
080.00.62733.8327226.73
091.0960.477258.5251.096
1056.8564047.172297.962859.2
11393.7465956.656477.853432.933
122273.222645.0093567.135775.821
PWM
ACGT
01-0.23-0.124-0.4780.532
02-1.895-1.9881.275-1.998
03-2.319-4.6721.358-5.641
04-5.6651.381-4.188-6.354
051.385-6.707-5.617-6.094
06-6.7071.385-5.443-6.458
07-6.458-6.7071.385-6.707
08-6.707-6.458-3.921.381
09-6.306-6.5151.385-6.306
10-3.4260.801-1.8010.454
11-1.5241.187-1.331-1.43
120.225-1.0330.675-0.848