Model info
| Transcription factor | Hic1 | ||||||||
| Model | HIC1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dKGKTGCCM | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 40 | ||||||||
| TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
| TF subfamily | Hypermethylated in Cancer proteins {2.3.4.17} | ||||||||
| MGI | MGI:1338010 | ||||||||
| EntrezGene | GeneID:15248 (SSTAR profile) | ||||||||
| UniProt ID | HIC1_MOUSE | ||||||||
| UniProt AC | Q9R1Y5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hic1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.001 | 4.122 | 20.178 | 7.031 |
| 02 | 0.97 | 3.879 | 29.634 | 4.849 |
| 03 | 0.0 | 0.0 | 36.422 | 2.909 |
| 04 | 0.97 | 0.0 | 13.578 | 24.784 |
| 05 | 0.0 | 0.0 | 0.0 | 39.332 |
| 06 | 0.97 | 0.0 | 38.362 | 0.0 |
| 07 | 0.97 | 38.362 | 0.0 | 0.0 |
| 08 | 0.0 | 39.332 | 0.0 | 0.0 |
| 09 | 7.516 | 24.542 | 3.637 | 3.637 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.187 | -0.758 | 0.674 | -0.302 |
| 02 | -1.74 | -0.807 | 1.044 | -0.623 |
| 03 | -2.461 | -2.461 | 1.245 | -1.033 |
| 04 | -1.74 | -2.461 | 0.299 | 0.872 |
| 05 | -2.461 | -2.461 | -2.461 | 1.32 |
| 06 | -1.74 | -2.461 | 1.296 | -2.461 |
| 07 | -1.74 | 1.296 | -2.461 | -2.461 |
| 08 | -2.461 | 1.32 | -2.461 | -2.461 |
| 09 | -0.243 | 0.862 | -0.859 | -0.859 |