We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHIC2
(GeneCards)
ModelHIC2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusnhRTGCCAGnn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words134
TF familyFactors with multiple dispersed zinc fingers {2.3.4}
TF subfamilyHypermethylated in Cancer proteins {2.3.4.17}
HGNCHGNC:18595
EntrezGeneGeneID:23119
(SSTAR profile)
UniProt IDHIC2_HUMAN
UniProt ACQ96JB3
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.22987
0.0005 5.08536
0.0001 7.686695
GTEx tissue expression atlas HIC2 expression
ReMap ChIP-seq dataset list HIC2 datasets
Motifs in JASPAR
PCM
ACGT
0146.046.013.029.0
0227.563.512.530.5
0367.51.564.50.5
040.00.00.0134.0
050.00.0134.00.0
060.0134.00.00.0
070.0134.00.00.0
08105.029.00.00.0
096.7514.75111.750.75
1026.041.045.022.0
1133.038.030.033.0
PWM
ACGT
010.3070.307-0.892-0.139
02-0.190.623-0.928-0.09
030.683-2.5450.638-3.003
04-3.345-3.345-3.3451.359
05-3.345-3.3451.359-3.345
06-3.3451.359-3.345-3.345
07-3.3451.359-3.345-3.345
081.118-0.139-3.345-3.345
09-1.471-0.7761.18-2.867
10-0.2430.1960.286-0.402
11-0.0150.122-0.106-0.015