Transcription factor | HIC2 (GeneCards) | ||||||||
Model | HIC2_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | HT-SELEX | ||||||||
Model release | HOCOMOCOv10 | ||||||||
Model length | 11 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | nhRTGCCAGnn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 134 | ||||||||
TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
TF subfamily | Hypermethylated in Cancer proteins {2.3.4.17} | ||||||||
HGNC | HGNC:18595 | ||||||||
EntrezGene | GeneID:23119 (SSTAR profile) | ||||||||
UniProt ID | HIC2_HUMAN | ||||||||
UniProt AC | Q96JB3 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | HIC2 expression | ||||||||
ReMap ChIP-seq dataset list | HIC2 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 46.0 | 46.0 | 13.0 | 29.0 |
02 | 27.5 | 63.5 | 12.5 | 30.5 |
03 | 67.5 | 1.5 | 64.5 | 0.5 |
04 | 0.0 | 0.0 | 0.0 | 134.0 |
05 | 0.0 | 0.0 | 134.0 | 0.0 |
06 | 0.0 | 134.0 | 0.0 | 0.0 |
07 | 0.0 | 134.0 | 0.0 | 0.0 |
08 | 105.0 | 29.0 | 0.0 | 0.0 |
09 | 6.75 | 14.75 | 111.75 | 0.75 |
10 | 26.0 | 41.0 | 45.0 | 22.0 |
11 | 33.0 | 38.0 | 30.0 | 33.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.307 | 0.307 | -0.892 | -0.139 |
02 | -0.19 | 0.623 | -0.928 | -0.09 |
03 | 0.683 | -2.545 | 0.638 | -3.003 |
04 | -3.345 | -3.345 | -3.345 | 1.359 |
05 | -3.345 | -3.345 | 1.359 | -3.345 |
06 | -3.345 | 1.359 | -3.345 | -3.345 |
07 | -3.345 | 1.359 | -3.345 | -3.345 |
08 | 1.118 | -0.139 | -3.345 | -3.345 |
09 | -1.471 | -0.776 | 1.18 | -2.867 |
10 | -0.243 | 0.196 | 0.286 | -0.402 |
11 | -0.015 | 0.122 | -0.106 | -0.015 |