We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHIF1A
(GeneCards)
ModelHIF1A_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
C
Motif rank
0
ConsensusvdACGTGh
Best auROC (human)0.762
Best auROC (mouse)0.738
Peak sets in benchmark (human)39
Peak sets in benchmark (mouse)8
Aligned words501
TF familyPAS domain factors {1.2.5}
TF subfamilyAhr-like factors {1.2.5.1}
HGNCHGNC:4910
EntrezGeneGeneID:3091
(SSTAR profile)
UniProt IDHIF1A_HUMAN
UniProt ACQ16665
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.2985500000000005
0.0005 4.892245
0.0001 6.057335
GTEx tissue expression atlas HIF1A expression
ReMap ChIP-seq dataset list HIF1A datasets
Motifs in JASPAR
PCM
ACGT
01106.082.0264.048.0
02117.025.0209.0149.0
03413.06.078.03.0
0467.0401.05.027.0
0514.01.0485.00.0
064.04.00.0492.0
070.02.0497.01.0
08143.0261.043.053.0
PWM
ACGT
01-0.163-0.4150.741-0.938
02-0.065-1.5610.5090.174
031.187-2.819-0.464-3.325
04-0.6131.157-2.961-1.489
05-2.096-3.9031.347-4.4
06-3.126-3.126-4.41.361
07-4.4-3.5731.371-3.903
080.1330.73-1.044-0.841