We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHif1a
ModelHIF1A_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
C
Motif rank
0
ConsensusbnvKRCGTGhb
Best auROC (human)0.719
Best auROC (mouse)0.718
Peak sets in benchmark (human)39
Peak sets in benchmark (mouse)8
Aligned words515
TF familyPAS domain factors {1.2.5}
TF subfamilyAhr-like factors {1.2.5.1}
MGIMGI:106918
EntrezGeneGeneID:15251
(SSTAR profile)
UniProt IDHIF1A_MOUSE
UniProt ACQ61221
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.575570000000001
0.0005 7.920380000000001
0.0001 10.81849
GTEx tissue expression atlas Hif1a expression
Motifs in JASPAR
MA0259.1 (ARNT::HIF1A; Mus musculus/Rattus rattus/Homo sapiens/Oryctolagus cuniculus)
MA1106.1 (HIF1A; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0112.020.024.022.014.019.042.030.045.056.057.078.08.016.047.010.0
0211.09.051.08.034.013.043.021.027.056.064.023.022.025.086.07.0
038.03.057.026.09.05.027.062.034.07.0101.0102.04.03.019.033.0
0450.01.04.00.016.00.02.00.0159.08.036.01.0142.05.072.04.0
053.0338.05.021.00.014.00.00.01.0104.01.08.00.05.00.00.0
060.00.04.00.015.00.0446.00.01.00.05.00.00.00.029.00.0
070.00.00.016.00.00.00.00.06.04.00.0474.00.00.00.00.0
080.00.06.00.00.00.04.00.00.00.00.00.02.01.0485.02.0
090.01.00.01.00.01.00.00.0122.0258.051.064.00.02.00.00.0
103.059.044.016.042.076.081.063.010.014.014.013.09.017.031.08.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.938-0.439-0.26-0.346-0.788-0.490.293-0.040.3610.5780.5950.907-1.328-0.6580.404-1.114
02-1.022-1.2150.485-1.3280.083-0.860.316-0.392-0.1440.5780.711-0.302-0.346-0.221.004-1.454
03-1.328-2.2340.595-0.181-1.215-1.77-0.1440.6790.083-1.4541.1651.174-1.975-2.234-0.490.054
040.465-3.126-1.975-4.4-0.658-4.4-2.584-4.41.617-1.3280.14-3.1261.504-1.770.828-1.975
05-2.2342.37-1.77-0.392-4.4-0.788-4.4-4.4-3.1261.194-3.126-1.328-4.4-1.77-4.4-4.4
06-4.4-4.4-1.975-4.4-0.721-4.42.647-4.4-3.126-4.4-1.77-4.4-4.4-4.4-0.074-4.4
07-4.4-4.4-4.4-0.658-4.4-4.4-4.4-4.4-1.6-1.975-4.42.708-4.4-4.4-4.4-4.4
08-4.4-4.4-1.6-4.4-4.4-4.4-1.975-4.4-4.4-4.4-4.4-4.4-2.584-3.1262.731-2.584
09-4.4-3.126-4.4-3.126-4.4-3.126-4.4-4.41.3532.10.4850.711-4.4-2.584-4.4-4.4
10-2.2340.630.339-0.6580.2930.8810.9450.695-1.114-0.788-0.788-0.86-1.215-0.599-0.008-1.328