Model info
| Transcription factor | Hif1a | ||||||||
| Model | HIF1A_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 8 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdACGTGh | ||||||||
| Best auROC (human) | 0.762 | ||||||||
| Best auROC (mouse) | 0.738 | ||||||||
| Peak sets in benchmark (human) | 39 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | PAS domain factors {1.2.5} | ||||||||
| TF subfamily | Ahr-like factors {1.2.5.1} | ||||||||
| MGI | MGI:106918 | ||||||||
| EntrezGene | GeneID:15251 (SSTAR profile) | ||||||||
| UniProt ID | HIF1A_MOUSE | ||||||||
| UniProt AC | Q61221 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hif1a expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 106.0 | 82.0 | 264.0 | 48.0 |
| 02 | 117.0 | 25.0 | 209.0 | 149.0 |
| 03 | 413.0 | 6.0 | 78.0 | 3.0 |
| 04 | 67.0 | 401.0 | 5.0 | 27.0 |
| 05 | 14.0 | 1.0 | 485.0 | 0.0 |
| 06 | 4.0 | 4.0 | 0.0 | 492.0 |
| 07 | 0.0 | 2.0 | 497.0 | 1.0 |
| 08 | 143.0 | 261.0 | 43.0 | 53.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.163 | -0.415 | 0.741 | -0.938 |
| 02 | -0.065 | -1.561 | 0.509 | 0.174 |
| 03 | 1.187 | -2.819 | -0.464 | -3.325 |
| 04 | -0.613 | 1.157 | -2.961 | -1.489 |
| 05 | -2.096 | -3.903 | 1.347 | -4.4 |
| 06 | -3.126 | -3.126 | -4.4 | 1.361 |
| 07 | -4.4 | -3.573 | 1.371 | -3.903 |
| 08 | 0.133 | 0.73 | -1.044 | -0.841 |