HLF_HUMAN.H11MO.0.C motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

HLF
(GeneCards)

Model

HLF_HUMAN.H11MO.0.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

13

Quality

C

Motif rank

0

Consensus

nRTKRYGTAAYvn

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

35

TF family

C/EBP-related {1.1.8}

TF subfamily

PAR factors {1.1.8.2}

HGNC

EntrezGene

GeneID:3131
(SSTAR profile)

UniProt ID

UniProt AC

Q16534
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.532259999999999
0.0005	5.3476099999999995
0.0001	7.0109200000000005

GTEx tissue expression atlas

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0043.1 (HLF; Homo sapiens)

MA0043.2 (HLF; Homo sapiens)

PCM

	A	C	G	T
01	7.082	5.703	15.086	7.082
02	18.856	2.99	10.117	2.99
03	0.0	0.0	0.0	34.953
04	0.644	2.023	6.07	26.215
05	18.765	2.023	14.164	0.0
06	0.0	16.188	2.668	16.097
07	2.023	0.0	32.93	0.0
08	0.0	6.07	0.0	28.883
09	34.953	0.0	0.0	0.0
10	33.987	0.0	0.0	0.966
11	0.966	19.822	0.0	14.164
12	14.164	13.752	4.047	2.99
13	4.289	13.027	13.349	4.289

PWM

	A	C	G	T
01	-0.189	-0.379	0.506	-0.189
02	0.718	-0.909	0.134	-0.909
03	-2.383	-2.383	-2.383	1.315
04	-1.837	-1.196	-0.325	1.035
05	0.714	-1.196	0.447	-2.383
06	-2.383	0.573	-0.996	0.568
07	-1.196	-2.383	1.256	-2.383
08	-2.383	-0.325	-2.383	1.129
09	1.315	-2.383	-2.383	-2.383
10	1.287	-2.383	-2.383	-1.647
11	-1.647	0.766	-2.383	0.447
12	0.447	0.419	-0.668	-0.909
13	-0.62	0.368	0.391	-0.62